JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MFSD13A_chr10_102456395_102482045	0/0	c0011	1554	1	0	0	0	0	1	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD13A_chr10_102456395_102482045	0/0	c0012	1554	1	0	0	1	0	0	copy fasta	MFSD13A	chr10	102456395	102482045
MFSD14A_chr1_100033095_100088377	1/1	c0001	1473	218	70	45	72	10	19	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14A_chr1_100033095_100088377	0/0	c0002	1473	22	4	3	10	0	5	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14A_chr1_100033095_100088377	0/0	c0003	1473	2	0	2	0	0	0	copy fasta	MFSD14A	chr1	100033095	100088377
MFSD14B_chr9_94369569_94466042	1/1	c0001	1521	340	77	66	144	15	36	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	c0002	1521	8	0	3	0	1	4	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	c0003	1521	1	1	0	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD14B_chr9_94369569_94466042	0/0	c0004	1521	1	0	1	0	0	0	copy fasta	MFSD14B	chr9	94369569	94466042
MFSD1_chr3_158797054_158834716	1/0	c0001	1398	173	26	31	88	6	21	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/1	c0002	1398	101	52	25	13	2	8	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0003	1398	61	5	11	42	1	2	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0004	1398	55	5	7	29	5	9	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0005	1398	5	4	1	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0006	1398	2	0	0	1	0	1	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0007	1398	1	0	1	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0008	1398	1	0	0	0	0	1	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0009	1398	1	1	0	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0010	1398	1	1	0	0	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD1_chr3_158797054_158834716	0/0	c0011	1398	1	0	0	1	0	0	copy fasta	MFSD1	chr3	158797054	158834716
MFSD2A_chr1_39950145_39974956	1/1	c0001	1593	380	89	64	166	16	43	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	c0002	1593	5	0	0	0	0	5	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	c0003	1593	4	4	0	0	0	0	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	c0004	1593	1	1	0	0	0	0	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	c0005	1593	1	0	0	1	0	0	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2A_chr1_39950145_39974956	0/0	c0006	1593	1	0	0	1	0	0	copy fasta	MFSD2A	chr1	39950145	39974956
MFSD2B_chr2_24005085_24031775	1/1	c0001	1515	278	70	62	91	15	38	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0002	1515	9	8	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0003	1515	7	0	2	0	3	2	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0004	1515	5	5	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0005	1515	3	3	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0006	1515	2	0	2	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0007	1515	1	0	0	1	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0008	1515	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0009	1515	1	0	0	0	0	1	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0010	1515	1	0	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0011	1515	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0012	1515	1	0	0	1	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0013	1515	1	0	0	0	0	1	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0014	1515	1	0	0	1	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0015	1515	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0016	1515	1	0	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0017	1515	1	1	0	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD2B_chr2_24005085_24031775	0/0	c0018	1515	1	0	1	0	0	0	copy fasta	MFSD2B	chr2	24005085	24031775
MFSD3_chr8_144504070_144516213	1/1	c0001	1239	345	60	70	156	16	41	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0002	1239	15	15	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0003	1239	9	9	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0004	1239	5	4	1	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0005	1239	3	0	0	3	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0006	1239	3	0	0	3	0	0	copy fasta	MFSD3	chr8	144504070	144516213