JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MFSD3_chr8_144504070_144516213	0/0	c0007	1239	3	3	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0008	1239	3	0	0	3	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0009	1239	2	2	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0010	1239	2	1	1	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0011	1239	2	2	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0012	1239	1	0	0	0	0	1	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0013	1206	1	0	0	1	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0014	1239	1	0	0	1	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0015	1239	1	0	0	1	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0016	1239	1	1	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0017	1239	1	0	1	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0018	1239	1	0	1	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD3_chr8_144504070_144516213	0/0	c0019	1239	1	1	0	0	0	0	copy fasta	MFSD3	chr8	144504070	144516213
MFSD4A_chr1_205564014_205607918	1/0	c0001	1545	208	23	30	124	8	22	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/1	c0002	1545	92	35	26	9	7	14	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0003	1545	25	11	9	1	1	3	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0004	1545	16	0	8	3	0	5	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0005	1545	12	10	2	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0006	1545	5	5	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0007	1545	5	4	0	0	0	1	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0008	1545	3	0	3	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0009	1545	3	3	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0010	1545	2	1	1	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0011	1545	2	0	0	2	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0012	1545	1	0	0	1	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0013	1545	1	0	1	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0014	1545	1	1	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0015	1545	1	1	0	0	0	0	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4A_chr1_205564014_205607918	0/0	c0016	1545	1	0	0	0	0	1	copy fasta	MFSD4A	chr1	205564014	205607918
MFSD4B_chr6_111254339_111285005	1/0	c0001	1557	202	68	17	95	5	16	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/1	c0002	1557	128	12	43	49	5	18	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0003	1557	10	1	2	5	1	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0004	1557	4	4	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0005	1557	4	0	4	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0006	1557	3	3	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0007	1557	2	0	0	0	1	1	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0008	1557	2	0	2	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0009	1557	2	2	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0010	1557	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0011	1557	1	0	0	1	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0012	1557	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0013	1557	1	0	1	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0014	1557	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0015	1557	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD4B_chr6_111254339_111285005	0/0	c0016	1557	1	1	0	0	0	0	copy fasta	MFSD4B	chr6	111254339	111285005
MFSD5_chr12_53247095_53259406	1/0	c0001	1353	241	64	40	104	14	18	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	0/1	c0002	1353	160	21	30	79	4	25	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	0/0	c0003	1353	4	4	0	0	0	0	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	0/0	c0004	1353	2	2	0	0	0	0	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	0/0	c0005	1353	1	0	0	0	0	1	copy fasta	MFSD5	chr12	53247095	53259406