JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD44_chr2_196981662_197315780	1/1	c0001	2982	56	30	7	7	2	8	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	c0002	2982	42	28	5	5	2	2	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	c0003	2982	7	2	4	0	0	1	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	c0004	2982	4	0	4	0	0	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	c0005	2982	2	0	0	0	0	2	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	c0006	2982	1	1	0	0	0	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	c0007	2982	1	0	0	0	0	1	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD44_chr2_196981662_197315780	0/0	c0008	2982	1	1	0	0	0	0	copy fasta	ANKRD44	chr2	196981662	197315780
ANKRD45_chr1_173603336_173674851	1/1	c0001	801	277	23	51	172	10	19	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	c0002	801	59	56	3	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	c0003	801	4	3	1	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	c0004	801	1	0	0	0	0	1	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD45_chr1_173603336_173674851	0/0	c0005	801	1	0	1	0	0	0	copy fasta	ANKRD45	chr1	173603336	173674851
ANKRD46_chr8_100515772_100564759	1/0	c0001	687	392	92	74	163	14	48	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/1	c0002	687	6	0	2	1	0	2	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	c0003	687	1	1	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD46_chr8_100515772_100564759	0/0	c0004	687	1	1	0	0	0	0	copy fasta	ANKRD46	chr8	100515772	100564759
ANKRD49_chr11_94488984_94504578	1/1	c0001	720	219	31	37	111	8	30	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	c0002	720	219	61	41	88	10	19	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	c0003	720	11	0	0	11	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	c0004	720	3	0	0	3	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	c0005	720	1	1	0	0	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	c0006	720	1	1	0	0	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	c0007	720	1	0	0	0	0	1	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD49_chr11_94488984_94504578	0/0	c0008	720	1	0	0	1	0	0	copy fasta	ANKRD49	chr11	94488984	94504578
ANKRD50_chr4_124659048_124717732	1/0	c0001	4290	254	47	56	122	8	20	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0002	4290	65	14	6	36	1	8	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0003	4290	17	7	1	7	1	1	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/1	c0004	4290	13	1	1	7	2	1	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0005	4290	8	7	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0006	4290	8	7	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0007	4290	2	0	0	0	0	2	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0008	4290	2	2	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0009	4290	2	2	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0010	4290	2	1	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0011	4290	1	0	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0012	4290	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0013	4290	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0014	4290	1	0	0	1	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0015	4290	1	0	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0016	4290	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0017	4290	1	1	0	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0018	4290	1	0	0	1	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD50_chr4_124659048_124717732	0/0	c0019	4290	1	0	1	0	0	0	copy fasta	ANKRD50	chr4	124659048	124717732
ANKRD52_chr12_56232807_56263384	0/1	c0001	3231	191	35	41	82	10	22	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	1/0	c0002	3231	39	37	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0003	3231	17	0	4	11	2	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0004	3231	8	6	2	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0005	3231	3	0	0	3	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0006	3231	2	2	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384