JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MFSD5_chr12_53247095_53259406	0/0	c0006	1353	1	1	0	0	0	0	copy fasta	MFSD5	chr12	53247095	53259406
MFSD5_chr12_53247095_53259406	0/0	c0007	1353	1	0	0	1	0	0	copy fasta	MFSD5	chr12	53247095	53259406
MFSD6L_chr17_8792110_8804365	1/0	c0001	1761	181	24	47	82	9	18	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0002	1761	91	17	10	55	2	7	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/1	c0003	1761	53	3	6	30	5	8	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0004	1761	40	3	11	23	2	1	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0005	1761	20	5	5	5	0	5	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0006	1761	16	0	0	13	0	3	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0007	1761	15	15	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0008	1761	15	6	2	4	0	3	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0009	1761	13	0	0	12	0	1	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0010	1761	9	8	1	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0011	1761	5	1	1	2	0	1	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0012	1761	3	0	0	3	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0013	1761	3	3	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0014	1761	3	0	0	3	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0015	1761	2	0	0	2	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0016	1761	2	2	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0017	1761	2	0	0	2	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0018	1761	2	2	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0019	1761	1	0	0	1	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0020	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0021	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0022	1761	1	0	1	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0023	1761	1	0	1	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0024	1761	1	0	1	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0025	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0026	1761	1	0	0	1	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0027	1761	1	0	0	0	0	1	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0028	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0029	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0030	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0031	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0032	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6L_chr17_8792110_8804365	0/0	c0033	1761	1	1	0	0	0	0	copy fasta	MFSD6L	chr17	8792110	8804365
MFSD6_chr2_190403355_190507314	1/0	c0001	2376	175	43	26	78	9	18	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/1	c0002	2376	156	20	29	93	3	10	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0003	2376	3	3	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0004	2376	2	2	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0005	2376	2	0	0	2	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0006	2376	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0007	2376	1	0	0	1	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0008	2376	1	0	1	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0009	2376	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0010	2376	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD6_chr2_190403355_190507314	0/0	c0011	2376	1	1	0	0	0	0	copy fasta	MFSD6	chr2	190403355	190507314
MFSD8_chr4_127912805_127970173	1/1	c0001	1557	240	68	35	95	12	28	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	c0002	1557	88	19	7	62	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	c0003	1557	16	0	3	13	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	c0004	1557	3	2	1	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173