JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MFSD8_chr4_127912805_127970173	0/0	c0005	1557	2	0	0	0	0	2	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	c0006	1557	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	c0007	1557	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	c0008	1557	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	c0009	1557	1	1	0	0	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD8_chr4_127912805_127970173	0/0	c0010	1557	1	0	0	1	0	0	copy fasta	MFSD8	chr4	127912805	127970173
MFSD9_chr2_102709630_102741888	1/1	c0001	1425	208	48	46	84	11	17	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0002	1425	134	15	18	81	3	17	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0003	1425	15	0	5	7	1	2	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0004	1425	5	5	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0005	1425	5	5	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0006	1425	5	5	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0007	1425	3	2	1	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0008	1425	2	0	0	0	1	1	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0009	1425	2	2	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0010	1425	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0011	1425	1	0	1	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0012	1425	1	1	0	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0013	1425	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0014	1425	1	0	0	0	0	1	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0015	1425	1	0	1	0	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MFSD9_chr2_102709630_102741888	0/0	c0016	1425	1	0	0	1	0	0	copy fasta	MFSD9	chr2	102709630	102741888
MGAM2_chr7_142106718_142227324	0/1	c0001	7548	55	2	15	32	3	2	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0002	7548	38	12	5	13	1	7	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0003	7548	36	10	6	14	2	4	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0004	7548	29	4	3	16	2	4	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0005	7548	13	0	0	12	0	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0006	7548	11	0	0	11	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0007	7548	8	0	1	4	0	3	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0008	7548	8	0	4	2	1	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0009	7548	7	0	4	2	1	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0010	7548	7	0	0	7	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0011	7548	7	6	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0012	7548	6	0	5	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0013	7548	4	0	0	2	2	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0014	7548	4	4	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0015	7548	4	4	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0016	7548	4	3	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0017	7548	4	2	2	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0018	7548	3	3	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0019	7548	3	0	0	3	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0020	7548	2	2	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0021	7548	2	0	0	2	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0022	7548	2	0	1	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0023	7548	2	1	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0024	7548	2	0	0	2	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0025	7548	2	2	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0026	7548	2	1	1	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0027	7548	2	2	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0028	7548	2	0	1	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324