JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MGAM2_chr7_142106718_142227324	0/0	c0079	7549	1	1	0	0	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0080	7549	1	0	0	0	0	1	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0081	7549	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM2_chr7_142106718_142227324	0/0	c0082	7549	1	0	0	1	0	0	copy fasta	MGAM2	chr7	142106718	142227324
MGAM_chr7_141990879_142111747	0/0	c0001	8262	28	0	0	21	4	3	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0002	8262	26	1	4	16	1	4	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0003	5574	18	1	7	6	2	2	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0004	8262	11	0	3	2	3	3	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0005	8262	9	0	7	0	1	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0006	5574	7	0	0	5	0	2	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0007	8262	7	0	0	4	0	3	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0008	8262	7	0	0	7	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0009	8262	6	0	0	4	1	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0010	8262	6	0	1	5	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0011	8262	5	0	0	5	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0012	5574	4	0	4	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0013	8262	4	0	1	0	1	2	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0014	8262	4	0	2	2	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0015	8262	4	1	0	3	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0016	8262	4	0	1	2	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0017	8262	4	3	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0018	8262	4	0	0	4	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0019	8262	3	0	0	0	0	3	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0020	8262	3	3	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0021	5574	3	0	0	3	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0022	8262	3	0	0	3	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0023	8262	2	0	2	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0024	8262	2	0	2	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0025	8262	2	0	0	0	0	2	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0026	8262	2	0	2	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0027	5574	2	0	0	2	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0028	8262	2	0	0	2	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0029	8262	2	0	0	2	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0030	8262	2	0	0	2	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0031	8262	2	0	0	2	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0032	8262	2	0	0	0	0	2	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0033	8262	2	0	0	2	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0034	8262	2	0	0	2	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0035	8262	2	0	1	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0036	8262	2	2	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0037	8262	2	2	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0038	8262	2	2	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0039	8262	2	2	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0040	8262	2	2	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0041	8262	2	2	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0042	8262	2	2	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0043	8262	2	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0044	8262	2	0	0	0	0	2	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0045	8238	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0046	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747