JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
MGAM_chr7_141990879_142111747	0/0	c0047	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0048	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0049	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	1/0	c0050	8262	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0051	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0052	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0053	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0054	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0055	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0056	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0057	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0058	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0059	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0060	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0061	5574	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0062	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0063	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0064	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0065	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0066	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0067	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0068	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0069	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0070	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0071	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0072	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0073	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0074	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0075	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0076	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0077	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0078	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0079	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0080	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0081	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0082	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0083	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0084	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0085	8262	1	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0086	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0087	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0088	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0089	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0090	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0091	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0092	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0093	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0094	8262	1	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0095	8262	1	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0096	8262	1	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747