JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MGAM_chr7_141990879_142111747	0/0	c0097	8262	1	0	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0098	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0099	8262	1	0	0	0	1	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0100	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0101	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0102	8262	1	0	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0103	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/1	c0104	8262	1	0	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0105	8262	1	0	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0106	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0107	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0108	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0109	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0110	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0111	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0112	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0113	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0114	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0115	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0116	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0117	8262	1	0	0	0	0	1	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0118	8262	1	0	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0119	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0120	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0121	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0122	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0123	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0124	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0125	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0126	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0127	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0128	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0129	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0130	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0131	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0132	8262	1	0	1	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0133	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0134	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0135	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0136	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0137	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0138	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0139	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0140	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0141	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0142	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0143	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0144	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0145	8262	1	1	0	0	0	0	copy fasta	MGAM	chr7	141990879	142111747
MGAM_chr7_141990879_142111747	0/0	c0146	8262	1	0	0	1	0	0	copy fasta	MGAM	chr7	141990879	142111747