JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MGARP_chr4_139261165_139285225	1/1	c0001	723	302	60	55	134	16	35	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0002	723	25	4	7	14	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0003	723	17	14	2	1	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0004	723	9	9	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0005	723	3	3	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0006	723	2	2	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0007	723	2	2	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0008	723	2	2	0	0	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0009	723	1	0	0	1	0	0	copy fasta	MGARP	chr4	139261165	139285225
MGARP_chr4_139261165_139285225	0/0	c0010	723	1	0	0	0	0	1	copy fasta	MGARP	chr4	139261165	139285225
MGAT1_chr5_180779780_180807806	0/1	c0001	1338	228	58	40	83	10	36	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	1/0	c0002	1338	112	6	27	66	6	6	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0003	1338	39	3	3	29	1	3	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0004	1338	14	7	2	3	0	2	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0005	1338	11	10	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0006	1338	9	0	0	9	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0007	1338	4	2	0	2	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0008	1338	3	2	1	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0009	1338	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0010	1338	2	0	0	0	0	2	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0011	1338	2	1	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0012	1338	2	2	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0013	1338	1	0	0	0	1	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0014	1338	1	0	0	0	0	1	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0015	1338	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0016	1338	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0017	1338	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0018	1338	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0019	1338	1	0	0	1	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT1_chr5_180779780_180807806	0/0	c0020	1338	1	1	0	0	0	0	copy fasta	MGAT1	chr5	180779780	180807806
MGAT2_chr14_49615799_49628481	1/1	c0001	1344	332	86	67	124	18	35	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0002	1344	7	7	0	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0003	1344	5	0	0	5	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0004	1344	3	0	0	3	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0005	1344	2	0	0	0	0	2	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0006	1344	2	0	0	0	0	2	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0007	1344	1	0	1	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0008	1344	1	1	0	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0009	1344	1	0	0	0	0	1	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0010	1344	1	1	0	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT2_chr14_49615799_49628481	0/0	c0011	1344	1	1	0	0	0	0	copy fasta	MGAT2	chr14	49615799	49628481
MGAT3_chr22_39452012_39497194	1/1	c0001	1602	245	72	71	45	15	40	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	c0002	1602	46	20	3	20	0	3	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	c0003	1602	4	0	0	1	2	1	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	c0004	1602	4	0	0	4	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	c0005	1602	2	2	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	c0006	1602	2	0	0	2	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	c0007	1602	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	c0008	1602	1	0	0	0	1	0	copy fasta	MGAT3	chr22	39452012	39497194
MGAT3_chr22_39452012_39497194	0/0	c0009	1602	1	1	0	0	0	0	copy fasta	MGAT3	chr22	39452012	39497194