JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MGAT4A_chr2_98614106_98736132	1/1	c0001	1608	255	60	59	92	8	34	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	c0002	1608	4	0	0	4	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	c0003	1608	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	c0004	1608	1	1	0	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4A_chr2_98614106_98736132	0/0	c0005	1608	1	0	1	0	0	0	copy fasta	MGAT4A	chr2	98614106	98736132
MGAT4B_chr5_179792610_179811866	1/1	c0001	1647	347	53	71	166	14	41	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0002	1647	18	16	2	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0003	1647	16	15	1	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0004	1647	6	0	0	6	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0005	1647	5	5	0	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0006	1647	3	0	0	3	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0007	1647	2	0	0	2	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0008	1647	2	0	0	0	0	2	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0009	1647	2	2	0	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0010	1647	2	1	1	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0011	1647	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0012	1647	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0013	1647	1	1	0	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0014	1647	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0015	1647	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0016	1647	1	0	0	0	0	1	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0017	1647	1	1	0	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0018	1647	1	0	1	0	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4B_chr5_179792610_179811866	0/0	c0019	1647	1	0	0	1	0	0	copy fasta	MGAT4B	chr5	179792610	179811866
MGAT4C_chr12_85950667_86261391	0/0	c0001	1437	168	56	33	49	12	18	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	c0002	1437	13	12	1	0	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	c0003	1437	4	0	2	0	2	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4C_chr12_85950667_86261391	0/0	c0004	1437	1	0	0	1	0	0	copy fasta	MGAT4C	chr12	85950667	86261391
MGAT4D_chr4_140437262_140503293	1/0	c0001	1125	216	64	37	92	3	19	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	c0002	1125	101	17	23	46	2	13	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	c0003	1125	5	0	0	5	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	c0004	1125	3	0	2	0	1	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/1	c0005	1125	3	0	0	2	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	c0006	1125	1	0	0	1	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	c0007	1125	1	1	0	0	0	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	c0008	1125	1	0	0	0	1	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT4D_chr4_140437262_140503293	0/0	c0009	1125	1	0	0	0	1	0	copy fasta	MGAT4D	chr4	140437262	140503293
MGAT5B_chr17_76863404_76955393	1/0	c0001	2379	37	8	13	5	4	6	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0002	2379	32	17	12	1	1	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/1	c0003	2379	24	1	6	11	3	2	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0004	2379	13	0	3	10	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0005	2379	12	5	3	1	0	3	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0006	2379	11	7	0	3	1	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0007	2379	11	0	3	7	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0008	2379	9	0	2	7	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0009	2379	8	1	0	5	0	2	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0010	2379	8	0	0	6	0	2	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0011	2379	8	0	2	5	1	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0012	2379	7	4	1	1	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0013	2379	7	1	2	3	0	1	copy fasta	MGAT5B	chr17	76863404	76955393