JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MGAT5B_chr17_76863404_76955393	0/0	c0014	2379	6	1	0	4	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0015	2379	6	0	1	3	0	2	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0016	2379	5	1	2	2	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0017	2379	5	2	0	3	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0018	2379	5	0	5	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0019	2379	4	1	2	0	1	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0020	2379	4	4	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0021	2379	4	0	0	0	0	4	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0022	2379	3	0	3	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0023	2379	3	0	0	0	1	2	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0024	2379	3	1	0	0	0	2	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0025	2379	3	2	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0026	2379	2	0	0	2	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0027	2379	2	0	0	2	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0028	2379	2	2	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0029	2379	2	0	0	2	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0030	2379	2	1	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0031	2379	2	1	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0032	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0033	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0034	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0035	2379	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0036	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0037	2379	1	0	0	0	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0038	2379	1	0	0	0	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0039	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0040	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0041	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0042	2379	1	0	0	0	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0043	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0044	2379	1	0	0	0	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0045	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0046	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0047	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0048	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0049	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0050	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0051	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0052	2379	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0053	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0054	2379	1	0	0	1	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0055	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0056	2379	1	0	1	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0057	2379	1	0	0	0	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0058	2379	1	1	0	0	0	0	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5B_chr17_76863404_76955393	0/0	c0059	2379	1	0	0	0	0	1	copy fasta	MGAT5B	chr17	76863404	76955393
MGAT5_chr2_134249072_134459621	1/1	c0001	2226	264	84	38	110	6	24	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	c0002	2226	13	1	5	2	0	5	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	c0003	2226	2	0	1	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	c0004	2226	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621