JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MGAT5_chr2_134249072_134459621	0/0	c0005	2226	1	1	0	0	0	0	copy fasta	MGAT5	chr2	134249072	134459621
MGAT5_chr2_134249072_134459621	0/0	c0006	2226	1	0	0	0	0	1	copy fasta	MGAT5	chr2	134249072	134459621
MGA_chr15_41655405_41774940	0/0	c0001	9345	96	20	20	41	4	11	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/1	c0002	9345	60	1	18	30	3	7	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	1/0	c0003	9345	53	17	10	19	2	4	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0004	9345	17	15	2	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0005	9345	10	5	2	0	0	3	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0006	9345	6	5	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0007	9345	5	5	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0008	9345	3	3	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0009	9345	2	0	0	2	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0010	9345	2	0	2	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0011	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0012	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0013	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0014	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0015	9345	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0016	9345	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0017	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0018	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0019	9345	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0020	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0021	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0022	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0023	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0024	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0025	9345	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0026	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0027	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0028	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0029	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0030	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0031	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0032	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0033	9345	1	0	1	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0034	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0035	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0036	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0037	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0038	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0039	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0040	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0041	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0042	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0043	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0044	9345	1	1	0	0	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0045	9345	1	0	0	0	0	1	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0046	9345	1	0	0	0	1	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0047	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940
MGA_chr15_41655405_41774940	0/0	c0048	9345	1	0	0	1	0	0	copy fasta	MGA	chr15	41655405	41774940