JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD52_chr12_56232807_56263384	0/0	c0007	3231	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0008	3231	1	0	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0009	3231	1	0	1	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0010	3231	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0011	3231	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0012	3231	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0013	3231	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0014	3231	1	0	0	1	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0015	3231	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0016	3231	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0017	3231	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD52_chr12_56232807_56263384	0/0	c0018	3231	1	1	0	0	0	0	copy fasta	ANKRD52	chr12	56232807	56263384
ANKRD53_chr2_70973630_70990499	1/0	c0001	1593	149	12	29	92	4	11	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/1	c0002	1593	133	23	16	67	3	23	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0003	1593	49	8	7	26	3	5	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0004	1593	22	0	17	0	1	4	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0005	1593	11	4	3	4	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0006	1593	10	10	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0007	1593	9	8	1	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0008	1593	8	7	1	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0009	1587	8	8	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0010	1593	5	3	2	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0011	1593	5	0	0	5	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0012	1593	4	0	0	4	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0013	1593	4	4	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0014	1593	4	0	1	0	0	3	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0015	1593	3	3	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0016	1593	3	0	2	0	1	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0017	1593	3	0	0	3	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0018	1593	2	0	0	0	0	2	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0019	1593	2	0	0	2	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0020	1593	2	0	0	0	2	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0021	1581	2	0	0	2	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0022	1593	1	0	0	0	0	1	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0023	1593	1	0	0	1	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0024	1593	1	0	0	1	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0025	1593	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0026	1593	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0027	1593	1	0	0	0	0	1	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0028	1593	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0029	1593	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0030	1593	1	0	0	1	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0031	1593	1	0	1	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0032	1593	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD53_chr2_70973630_70990499	0/0	c0033	1593	1	1	0	0	0	0	copy fasta	ANKRD53	chr2	70973630	70990499
ANKRD54_chr22_37825855_37849334	1/1	c0001	903	373	93	75	145	14	44	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	c0002	903	5	0	0	5	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	c0003	903	2	0	0	2	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	c0004	903	1	0	0	1	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	c0005	903	1	0	0	1	0	0	copy fasta	ANKRD54	chr22	37825855	37849334