JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MGLL_chr3_127684066_127827515	1/1	c0001	942	278	74	35	126	9	32	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	c0002	942	28	15	4	4	1	4	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	c0003	942	2	0	2	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	c0004	942	2	0	0	2	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	c0005	942	1	0	0	1	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	c0006	942	1	1	0	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	c0007	942	1	0	1	0	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGLL_chr3_127684066_127827515	0/0	c0008	942	1	0	0	1	0	0	copy fasta	MGLL	chr3	127684066	127827515
MGME1_chr20_17964018_17996122	1/0	c0001	1035	254	71	44	106	9	23	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/1	c0002	1035	113	15	13	61	6	17	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	c0003	1035	26	3	13	5	3	2	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	c0004	1035	3	0	0	3	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	c0005	1035	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	c0006	1035	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	c0007	1035	1	1	0	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	c0008	1035	1	0	1	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	c0009	1035	1	0	1	0	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGME1_chr20_17964018_17996122	0/0	c0010	1035	1	0	0	1	0	0	copy fasta	MGME1	chr20	17964018	17996122
MGMT_chr10_129462241_129775983	1/1	c0001	624	151	54	31	41	4	19	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	c0002	624	32	17	8	7	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	c0003	624	4	0	1	0	2	1	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	c0004	624	3	0	1	0	2	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	c0005	624	2	2	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	c0006	624	1	0	1	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGMT_chr10_129462241_129775983	0/0	c0007	624	1	1	0	0	0	0	copy fasta	MGMT	chr10	129462241	129775983
MGP_chr12_14875864_14890854	1/1	c0001	312	254	44	37	140	5	26	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	c0002	312	121	45	29	28	6	13	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	c0003	312	13	0	0	8	0	5	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	c0004	312	3	0	0	3	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	c0005	312	3	0	2	0	1	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	c0006	312	2	0	2	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	c0007	312	1	1	0	0	0	0	copy fasta	MGP	chr12	14875864	14890854
MGP_chr12_14875864_14890854	0/0	c0008	312	1	0	0	1	0	0	copy fasta	MGP	chr12	14875864	14890854
MGRN1_chr16_4619826_4695972	1/0	c0001	1731	321	82	53	130	16	39	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	c0002	1731	4	3	1	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	c0003	1731	3	1	2	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	c0004	1731	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	c0005	1731	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	c0006	1731	1	1	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	c0007	1731	1	0	0	0	0	1	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/1	c0008	1731	1	0	0	0	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGRN1_chr16_4619826_4695972	0/0	c0009	1731	1	0	0	1	0	0	copy fasta	MGRN1	chr16	4619826	4695972
MGST1_chr12_16342645_16369410	1/1	c0001	468	459	94	76	221	18	48	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	c0002	468	2	0	0	2	0	0	copy fasta	MGST1	chr12	16342645	16369410
MGST1_chr12_16342645_16369410	0/0	c0003	468	1	0	0	1	0	0	copy fasta	MGST1	chr12	16342645	16369410
MGST2_chr4_139660819_139709243	1/1	c0001	444	435	92	80	204	14	43	copy fasta	MGST2	chr4	139660819	139709243
MGST2_chr4_139660819_139709243	0/0	c0002	444	3	0	1	0	2	0	copy fasta	MGST2	chr4	139660819	139709243
MGST2_chr4_139660819_139709243	0/0	c0003	444	1	0	0	0	0	1	copy fasta	MGST2	chr4	139660819	139709243
MGST2_chr4_139660819_139709243	0/0	c0004	444	1	0	1	0	0	0	copy fasta	MGST2	chr4	139660819	139709243
MGST3_chr1_165626234_165661136	1/1	c0001	459	345	98	75	112	18	40	copy fasta	MGST3	chr1	165626234	165661136