JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MGST3_chr1_165626234_165661136	0/0	c0002	459	1	0	1	0	0	0	copy fasta	MGST3	chr1	165626234	165661136
MIA2_chr14_39228915_39355694	0/0	c0001	4239	65	0	8	52	1	4	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0002	4239	41	5	14	18	2	2	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0003	4239	37	6	1	26	1	3	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/1	c0004	4239	29	2	11	7	4	4	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0005	4239	19	0	2	7	1	9	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	1/0	c0006	4239	19	4	9	1	3	1	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0007	4239	17	2	6	5	2	2	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0008	4239	13	1	0	10	0	2	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0009	4239	12	11	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0010	4239	10	7	1	1	0	1	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0011	4239	10	5	2	2	0	1	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0012	4239	8	7	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0013	4239	8	6	0	0	0	2	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0014	4239	8	8	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0015	4239	8	0	6	2	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0016	4239	7	0	1	2	0	4	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0017	4239	5	0	1	4	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0018	4239	5	2	0	3	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0019	4239	5	5	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0020	4239	4	4	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0021	4239	4	4	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0022	4239	3	3	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0023	4239	2	0	0	2	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0024	4239	2	0	1	0	1	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0025	4239	2	1	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0026	4239	2	2	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0027	4239	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0028	4239	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0029	4239	1	0	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0030	4239	1	0	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0031	4239	1	0	0	0	0	1	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0032	4239	1	0	0	0	1	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0033	4239	1	0	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0034	4239	1	0	0	0	0	1	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0035	4239	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0036	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0037	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0038	4239	1	0	1	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0039	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0040	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0041	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0042	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0043	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0044	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0045	4239	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0046	4239	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0047	4239	1	0	0	0	0	1	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0048	4239	1	0	0	1	0	0	copy fasta	MIA2	chr14	39228915	39355694
MIA2_chr14_39228915_39355694	0/0	c0049	4239	1	1	0	0	0	0	copy fasta	MIA2	chr14	39228915	39355694