JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MIA3_chr1_222613097_222673007	0/0	c0001	5724	110	25	24	50	1	10	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0002	5724	85	6	14	44	7	14	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0003	5724	68	30	8	21	1	8	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/1	c0004	5724	55	10	9	26	4	5	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0005	5724	9	0	2	5	0	2	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0006	5724	7	7	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0007	5724	3	0	0	3	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0008	5724	3	0	0	3	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0009	5724	3	0	0	3	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0010	5724	2	2	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0011	5724	2	2	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0012	5724	2	1	1	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0013	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0014	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0015	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0016	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	1/0	c0017	5724	1	0	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0018	5724	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0019	5724	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0020	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0021	5724	1	0	0	0	1	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0022	5724	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0023	5724	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0024	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0025	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0026	5724	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0027	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0028	5724	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0029	5724	1	0	1	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0030	5724	1	1	0	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0031	5724	1	0	1	0	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0032	5724	1	0	0	1	0	0	copy fasta	MIA3	chr1	222613097	222673007
MIA3_chr1_222613097_222673007	0/0	c0033	5724	1	0	0	0	0	1	copy fasta	MIA3	chr1	222613097	222673007
MIA_chr19_40770521_40782490	1/1	c0001	396	344	84	58	147	14	39	copy fasta	MIA	chr19	40770521	40782490
MIA_chr19_40770521_40782490	0/0	c0002	396	58	5	2	46	2	3	copy fasta	MIA	chr19	40770521	40782490
MIA_chr19_40770521_40782490	0/0	c0003	433	1	0	0	1	0	0	copy fasta	MIA	chr19	40770521	40782490
MIA_chr19_40770521_40782490	0/0	c0004	396	1	1	0	0	0	0	copy fasta	MIA	chr19	40770521	40782490
MIB1_chr18_21735792_21875953	1/1	c0001	3021	305	88	64	119	4	28	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	c0002	3021	1	0	0	1	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	c0003	3021	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB1_chr18_21735792_21875953	0/0	c0004	3021	1	1	0	0	0	0	copy fasta	MIB1	chr18	21735792	21875953
MIB2_chr1_1610500_1635605	1/1	c0001	2868	276	55	50	122	12	35	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0002	2868	57	2	18	26	6	5	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0003	2862	19	5	1	11	0	2	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0004	2868	6	6	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0005	2868	5	0	0	5	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0006	2868	4	4	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0007	2868	4	4	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0008	2861	4	4	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0009	2868	4	4	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605