JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MIB2_chr1_1610500_1635605	0/0	c0010	2862	4	4	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0011	2868	3	0	0	3	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0012	2868	2	0	0	2	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0013	2868	2	2	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0014	2868	2	2	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0015	2868	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0016	2897	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0017	2862	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0018	2868	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0019	2868	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0020	2868	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0021	2868	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0022	2868	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0023	2814	1	0	1	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0024	2868	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0025	2862	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0026	2862	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0027	2862	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0028	2862	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0029	2868	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0030	2862	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0031	2868	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0032	2868	1	0	0	1	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0033	2868	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MIB2_chr1_1610500_1635605	0/0	c0034	2868	1	1	0	0	0	0	copy fasta	MIB2	chr1	1610500	1635605
MICAL1_chr6_109439062_109460772	1/1	c0001	3204	159	21	28	89	4	15	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0002	3204	138	12	22	78	6	20	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0003	3204	42	5	8	24	3	2	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0004	3204	37	35	2	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0005	3204	13	0	11	0	1	1	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0006	3204	5	5	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0007	3204	4	4	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0008	3204	4	0	0	4	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0009	3204	3	0	3	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0010	3204	3	3	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0011	3204	2	2	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0012	3204	2	2	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0013	3204	2	0	0	0	0	2	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0014	3204	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0015	3204	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0016	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0017	3204	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0018	3204	1	0	0	0	0	1	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0019	3204	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0020	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0021	3204	1	0	1	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0022	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0023	3204	1	0	1	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0024	3204	1	1	0	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0025	3204	1	0	0	0	0	1	copy fasta	MICAL1	chr6	109439062	109460772