JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MICAL1_chr6_109439062_109460772	0/0	c0026	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0027	3204	1	0	1	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0028	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0029	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0030	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0031	3204	1	0	1	0	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0032	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL1_chr6_109439062_109460772	0/0	c0033	3204	1	0	0	1	0	0	copy fasta	MICAL1	chr6	109439062	109460772
MICAL2_chr11_12105590_12268785	1/1	c0001	3375	59	12	6	29	2	8	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0002	3375	46	0	3	37	0	6	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0003	3375	39	20	4	13	0	2	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0004	3375	34	20	7	0	6	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0005	3375	19	0	13	6	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0006	3375	13	0	3	9	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0007	3375	10	0	4	4	1	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0008	3375	10	1	0	6	0	3	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0009	3375	10	3	4	1	0	2	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0010	3375	10	8	2	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0011	3375	8	4	2	2	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0012	3375	8	0	0	4	1	3	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0013	3375	8	0	3	5	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0014	3375	7	0	4	2	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0015	3375	6	0	0	6	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0016	3375	4	0	1	0	0	3	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0017	3375	4	4	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0018	3375	3	0	0	3	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0019	3375	3	0	1	2	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0020	3375	3	0	0	3	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0021	3375	2	1	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0022	3375	2	0	0	1	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0023	3375	2	2	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0024	3375	2	0	2	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0025	3375	2	0	0	2	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0026	3375	2	0	0	0	0	2	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0027	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0028	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0029	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0030	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0031	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0032	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0033	3375	1	0	0	0	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0034	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0035	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0036	3375	1	0	0	0	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0037	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0038	3375	1	0	1	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0039	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0040	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0041	3375	1	0	1	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0042	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785