JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MICAL2_chr11_12105590_12268785	0/0	c0043	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0044	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0045	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0046	3375	1	0	0	0	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0047	3375	1	0	0	0	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0048	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0049	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0050	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0051	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0052	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0053	3375	1	0	1	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0054	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0055	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0056	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0057	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0058	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0059	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0060	3375	1	0	0	0	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0061	3375	1	0	1	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0062	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0063	3375	1	1	0	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0064	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0065	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0066	3375	1	0	0	0	0	1	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0067	3375	1	0	0	1	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL2_chr11_12105590_12268785	0/0	c0068	3375	1	0	1	0	0	0	copy fasta	MICAL2	chr11	12105590	12268785
MICAL3_chr22_17782649_18029561	1/1	c0001	6009	92	9	17	43	5	16	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0002	6009	22	5	6	8	0	3	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0003	6009	16	2	8	3	0	3	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0004	6009	12	0	0	12	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0005	6009	8	7	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0006	6009	8	8	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0007	6009	7	5	0	0	1	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0008	6009	7	0	6	0	1	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0009	6009	6	6	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0010	6009	5	0	0	4	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0011	6009	5	0	0	5	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0012	6009	4	0	3	0	1	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0013	6009	4	4	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0014	6009	4	0	4	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0015	6009	3	0	0	2	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0016	6009	3	3	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0017	6012	3	3	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0018	6009	3	0	2	0	1	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0019	6009	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0020	6009	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0021	6009	2	0	0	2	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0022	6009	2	1	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0023	6009	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0024	6009	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561