JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MICAL3_chr22_17782649_18029561	0/0	c0025	6009	2	0	0	2	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0026	6009	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0027	6009	2	0	0	2	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0028	6009	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0029	6009	2	1	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0030	6009	2	2	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0031	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0032	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0033	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0034	6009	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0035	6009	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0036	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0037	6009	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0038	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0039	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0040	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0041	6009	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0042	6009	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0043	6009	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0044	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0045	6009	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0046	6009	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0047	6009	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0048	6009	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0049	6009	1	0	0	0	1	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0050	6009	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0051	6009	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0052	5995	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0053	6009	1	0	1	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0054	6012	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0055	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0056	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0057	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0058	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0059	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0060	6009	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0061	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0062	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0063	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0064	6009	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0065	6009	1	0	0	1	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0066	6009	1	1	0	0	0	0	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0067	6009	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICAL3_chr22_17782649_18029561	0/0	c0068	6009	1	0	0	0	0	1	copy fasta	MICAL3	chr22	17782649	18029561
MICALL1_chr22_37901297_37947822	1/1	c0001	2592	243	71	48	87	13	22	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0002	2592	58	1	13	30	4	10	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0003	2592	20	7	1	10	0	2	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0004	2592	3	0	0	3	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0005	2592	3	3	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0006	2592	2	0	0	0	0	2	copy fasta	MICALL1	chr22	37901297	37947822