JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MICALL1_chr22_37901297_37947822	0/0	c0007	2592	2	0	1	0	0	1	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0008	2592	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0009	2592	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0010	2592	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0011	2592	1	0	0	0	0	1	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0012	2592	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0013	2592	1	0	0	0	1	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0014	2592	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0015	2592	1	0	0	0	0	1	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0016	2592	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0017	2592	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0018	2592	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0019	2592	1	0	0	0	0	1	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0020	2592	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0021	2592	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0022	2592	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0023	2592	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0024	2592	1	0	1	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0025	2592	1	1	0	0	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL1_chr22_37901297_37947822	0/0	c0026	2592	1	0	0	1	0	0	copy fasta	MICALL1	chr22	37901297	37947822
MICALL2_chr7_1429359_1464470	0/1	c0001	2715	100	15	31	35	7	11	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0002	2715	47	1	7	28	3	8	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0003	2715	19	1	13	5	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0004	2715	9	8	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0005	2715	6	6	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0006	2715	4	2	2	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0007	2715	4	1	2	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0008	2715	3	3	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0009	2715	3	3	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0010	2715	3	0	0	3	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0011	2715	3	3	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	1/0	c0012	2715	3	0	2	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0013	2715	3	2	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0014	2715	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0015	2715	2	0	0	0	0	2	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0016	2715	2	0	0	0	2	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0017	2715	2	1	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0018	2715	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0019	2715	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0020	2715	2	0	0	0	0	2	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0021	2715	2	1	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0022	2715	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0023	2715	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0024	2715	2	2	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0025	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0026	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0027	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0028	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0029	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0030	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470