JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MICALL2_chr7_1429359_1464470	0/0	c0031	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0032	2715	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0033	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0034	2715	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0035	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0036	2715	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0037	2700	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0038	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0039	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0040	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0041	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0042	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0043	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0044	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0045	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0046	2715	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0047	2715	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0048	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0049	2715	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0050	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0051	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0052	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0053	2715	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0054	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0055	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0056	2715	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0057	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0058	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0059	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0060	2715	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0061	2715	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0062	2694	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0063	2715	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0064	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0065	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0066	2715	1	0	0	0	0	1	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0067	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0068	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0069	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0070	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0071	2715	1	0	0	1	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0072	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0073	2715	1	0	1	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0074	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICALL2_chr7_1429359_1464470	0/0	c0075	2715	1	1	0	0	0	0	copy fasta	MICALL2	chr7	1429359	1464470
MICA_chr6_31398595_31420315	0/0	c0001	1010	70	13	17	34	2	4	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0002	1001	56	24	8	13	2	9	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0003	999	53	15	9	24	2	3	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0004	1001	48	0	5	35	1	7	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0005	998	45	1	7	34	0	3	copy fasta	MICA	chr6	31398595	31420315