JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MICA_chr6_31398595_31420315	0/0	c0006	998	38	0	6	26	0	6	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/1	c0007	999	32	4	8	7	4	8	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0008	995	20	1	0	17	1	1	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0009	995	14	8	4	0	2	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0010	998	13	1	0	9	1	2	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0011	1009	7	0	0	3	1	3	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0012	995	6	1	4	0	1	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0013	1009	5	4	1	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0014	1001	5	3	1	0	0	1	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0015	995	4	1	0	3	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0016	999	4	4	0	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0017	1001	3	0	3	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0018	1010	2	2	0	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0019	995	2	0	1	0	1	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0020	998	2	0	1	0	0	1	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0021	998	2	2	0	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0022	999	2	0	0	2	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0023	998	1	0	0	1	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0024	998	1	0	0	1	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0025	1010	1	0	1	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0026	1010	1	1	0	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0027	1001	1	1	0	0	0	0	copy fasta	MICA	chr6	31398595	31420315
MICA_chr6_31398595_31420315	0/0	c0028	998	1	0	0	1	0	0	copy fasta	MICA	chr6	31398595	31420315
MICB_chr6_31493145_31516124	0/0	c0001	1152	207	32	44	105	10	16	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/1	c0002	1152	87	26	18	29	1	12	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0003	1152	53	10	9	28	2	4	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0004	1152	40	0	0	29	1	10	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0005	1152	27	10	6	7	2	2	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0006	1152	13	4	1	4	1	3	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0007	1152	9	1	2	6	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0008	1152	8	2	0	5	1	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0009	1152	4	2	1	0	0	1	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0010	1152	4	4	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0011	1152	1	1	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0012	1152	1	0	1	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0013	1152	1	1	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0014	1152	1	0	0	1	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0015	1152	1	1	0	0	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0016	1152	1	0	0	1	0	0	copy fasta	MICB	chr6	31493145	31516124
MICB_chr6_31493145_31516124	0/0	c0017	1152	1	0	0	1	0	0	copy fasta	MICB	chr6	31493145	31516124
MICOS10_chr1_19591979_19634820	1/1	c0001	237	216	27	49	104	7	27	copy fasta	MICOS10	chr1	19591979	19634820
MICOS10_chr1_19591979_19634820	0/0	c0002	237	132	61	21	34	5	11	copy fasta	MICOS10	chr1	19591979	19634820
MICOS13_chr19_5673422_5685516	1/1	c0001	357	380	91	80	149	16	42	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	c0002	357	1	1	0	0	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICOS13_chr19_5673422_5685516	0/0	c0003	357	1	0	0	1	0	0	copy fasta	MICOS13	chr19	5673422	5685516
MICU1_chr10_72362340_72631079	1/1	c0001	1431	202	81	50	36	8	25	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	c0002	1431	4	4	0	0	0	0	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	c0003	1431	1	0	0	0	0	1	copy fasta	MICU1	chr10	72362340	72631079
MICU1_chr10_72362340_72631079	0/0	c0004	1431	1	1	0	0	0	0	copy fasta	MICU1	chr10	72362340	72631079
MICU2_chr13_21487691_21609170	1/1	c0001	1305	265	67	53	106	10	27	copy fasta	MICU2	chr13	21487691	21609170