JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD54_chr22_37825855_37849334	0/0	c0006	903	1	1	0	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD54_chr22_37825855_37849334	0/0	c0007	903	1	0	1	0	0	0	copy fasta	ANKRD54	chr22	37825855	37849334
ANKRD55_chr5_56094680_56238330	1/1	c0001	1845	190	56	45	60	5	22	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0002	1845	74	7	7	45	5	10	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0003	1845	14	12	2	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0004	1845	7	7	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0005	1845	6	1	2	0	1	2	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0006	1845	2	0	0	1	1	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0007	1845	2	0	2	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0008	1845	2	2	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0009	1845	1	0	0	1	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0010	1845	1	0	1	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0011	1845	1	0	1	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0012	1845	1	0	1	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0013	1845	1	0	1	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0014	1845	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0015	1845	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0016	1845	1	0	0	1	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0017	1845	1	0	0	1	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0018	1845	1	0	0	1	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD55_chr5_56094680_56238330	0/0	c0019	1845	1	1	0	0	0	0	copy fasta	ANKRD55	chr5	56094680	56238330
ANKRD60_chr20_58211126_58233653	0/1	c0001	1038	99	7	32	32	4	23	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0002	1041	90	2	14	68	3	3	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0003	1038	74	31	5	37	0	1	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0004	1038	69	15	22	19	7	6	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	1/0	c0005	1038	38	15	1	13	3	5	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0006	1038	30	10	0	19	0	1	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0007	1041	22	1	0	17	0	4	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0008	1038	6	0	0	6	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0009	1041	5	0	0	5	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0010	1038	4	1	0	3	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0011	1038	3	3	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0012	1041	2	0	0	2	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0013	1038	2	2	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0014	1038	2	0	1	0	0	1	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0015	1041	1	0	0	0	1	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0016	1041	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0017	1041	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0018	1038	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0019	1038	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0020	1038	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0021	1038	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0022	1028	1	0	1	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0023	1038	1	0	0	1	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0024	1038	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0025	1038	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD60_chr20_58211126_58233653	0/0	c0026	1038	1	1	0	0	0	0	copy fasta	ANKRD60	chr20	58211126	58233653
ANKRD61_chr7_6026376_6041552	1/0	c0001	1257	212	34	37	104	4	32	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0002	1257	118	14	28	60	9	7	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/1	c0003	1257	51	28	13	2	3	4	copy fasta	ANKRD61	chr7	6026376	6041552