JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MICU2_chr13_21487691_21609170	0/0	c0002	1305	23	21	2	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	c0003	1305	22	2	8	0	6	6	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	c0004	1305	1	0	1	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	c0005	1305	1	1	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	c0006	1305	1	1	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	c0007	1305	1	1	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	c0008	1305	1	0	0	0	0	1	copy fasta	MICU2	chr13	21487691	21609170
MICU2_chr13_21487691_21609170	0/0	c0009	1305	1	1	0	0	0	0	copy fasta	MICU2	chr13	21487691	21609170
MICU3_chr8_17022238_17127642	1/1	c0001	1593	313	62	54	154	11	30	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0002	1593	25	24	1	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0003	1593	15	0	6	4	1	4	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0004	1593	6	0	0	6	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0005	1593	4	4	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0006	1593	3	3	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0007	1593	2	0	2	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0008	1593	1	1	0	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0009	1593	1	0	1	0	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0010	1593	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0011	1593	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0012	1593	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MICU3_chr8_17022238_17127642	0/0	c0013	1593	1	0	0	1	0	0	copy fasta	MICU3	chr8	17022238	17127642
MID1IP1_chrX_38796459_38811532	1/1	c0001	552	321	75	52	147	11	34	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	c0002	552	2	2	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	c0003	552	1	1	0	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	c0004	552	1	0	0	1	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1IP1_chrX_38796459_38811532	0/0	c0005	552	1	0	1	0	0	0	copy fasta	MID1IP1	chrX	38796459	38811532
MID1_chrX_10440556_10625585	1/1	c0001	2004	138	33	19	64	6	14	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	c0002	2004	19	15	3	0	0	1	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	c0003	2004	2	0	1	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	c0004	2004	2	1	1	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	c0005	2004	1	0	0	0	1	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	c0006	2004	1	0	0	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	c0007	2004	1	1	0	0	0	0	copy fasta	MID1	chrX	10440556	10625585
MID1_chrX_10440556_10625585	0/0	c0008	2008	1	0	0	1	0	0	copy fasta	MID1	chrX	10440556	10625585
MID2_chrX_107820866_107936637	1/1	c0001	2208	141	53	21	47	4	14	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	c0002	2208	28	10	1	14	1	2	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	c0003	2208	8	0	2	1	2	3	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	c0004	2209	1	0	0	1	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	c0005	2209	1	0	0	1	0	0	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	c0006	2208	1	0	0	0	0	1	copy fasta	MID2	chrX	107820866	107936637
MID2_chrX_107820866_107936637	0/0	c0007	2207	1	0	1	0	0	0	copy fasta	MID2	chrX	107820866	107936637
MIDEAS_chr14_73710122_73765303	0/0	c0001	3300	132	48	12	53	5	14	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0002	3300	45	5	8	22	2	8	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0003	3300	37	6	21	1	2	7	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	1/1	c0004	3300	32	2	12	4	4	8	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0005	3300	21	15	6	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0006	3300	10	0	2	8	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0007	3300	9	0	0	9	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0008	3300	8	1	0	6	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0009	3300	6	2	1	0	1	2	copy fasta	MIDEAS	chr14	73710122	73765303