JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MIDEAS_chr14_73710122_73765303	0/0	c0010	3300	6	0	0	6	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0011	3309	5	0	4	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0012	3300	4	2	2	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0013	3300	3	0	0	3	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0014	3300	3	0	0	3	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0015	3300	2	0	0	2	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0016	3300	2	0	2	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0017	3300	2	2	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0018	3300	2	2	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0019	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0020	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0021	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0022	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0023	3300	1	0	1	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0024	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0025	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0026	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0027	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0028	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0029	3300	1	0	0	0	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0030	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0031	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0032	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0033	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0034	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0035	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0036	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0037	3300	1	1	0	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0038	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0039	3300	1	0	1	0	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0040	3300	1	0	0	0	0	1	copy fasta	MIDEAS	chr14	73710122	73765303
MIDEAS_chr14_73710122_73765303	0/0	c0041	3300	1	0	0	1	0	0	copy fasta	MIDEAS	chr14	73710122	73765303
MIDN_chr19_1243583_1264143	1/1	c0001	1536	205	44	51	68	11	29	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0002	1536	116	3	30	68	6	9	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0003	1536	69	44	3	19	0	3	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0004	1536	6	0	0	6	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0005	1536	5	0	1	1	1	2	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0006	1536	3	3	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0007	1536	2	0	0	2	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0008	1536	1	0	1	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0009	1536	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0010	1536	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0011	1536	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0012	1536	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0013	1536	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0014	1536	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0015	1536	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0016	1536	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0017	1536	1	0	0	1	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIDN_chr19_1243583_1264143	0/0	c0018	1536	1	0	0	0	0	1	copy fasta	MIDN	chr19	1243583	1264143