JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MIDN_chr19_1243583_1264143	0/0	c0019	1536	1	1	0	0	0	0	copy fasta	MIDN	chr19	1243583	1264143
MIEF1_chr22_39497290_39523132	1/1	c0001	1392	374	85	75	147	17	48	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0002	1392	5	5	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0003	1392	3	0	0	3	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0004	1392	3	2	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0005	1392	2	1	0	0	0	1	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0006	1392	2	0	0	2	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0007	1392	2	1	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0008	1392	2	2	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0009	1392	1	0	1	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0010	1392	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0011	1392	1	0	0	0	1	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0012	1392	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0013	1392	1	0	0	1	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0014	1392	1	1	0	0	0	0	copy fasta	MIEF1	chr22	39497290	39523132
MIEF1_chr22_39497290_39523132	0/0	c0015	1392	1	0	0	0	0	1	copy fasta	MIEF1	chr22	39497290	39523132
MIEF2_chr17_18255662_18271552	0/0	c0001	1365	197	70	40	66	5	16	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	1/1	c0002	1365	127	6	23	70	5	21	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0003	1365	73	16	13	37	1	6	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0004	1365	4	0	0	4	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0005	1365	3	3	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0006	1365	2	0	0	2	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0007	1365	2	0	1	0	0	1	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0008	1365	1	0	1	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0009	1365	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0010	1365	1	0	0	0	1	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0011	1365	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0012	1365	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0013	1365	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0014	1365	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0015	1365	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0016	1365	1	1	0	0	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEF2_chr17_18255662_18271552	0/0	c0017	1365	1	0	0	1	0	0	copy fasta	MIEF2	chr17	18255662	18271552
MIEN1_chr17_39723510_39735532	1/1	c0001	348	361	90	68	147	18	36	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	c0002	348	2	0	0	2	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIEN1_chr17_39723510_39735532	0/0	c0003	348	1	0	0	1	0	0	copy fasta	MIEN1	chr17	39723510	39735532
MIER1_chr1_66919990_66993619	1/1	c0001	1698	240	79	39	80	12	28	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	c0002	1698	3	3	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	c0003	1698	2	0	2	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	c0004	1698	1	1	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	c0005	1698	1	1	0	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER1_chr1_66919990_66993619	0/0	c0006	1698	1	0	1	0	0	0	copy fasta	MIER1	chr1	66919990	66993619
MIER2_chr19_300573_349796	1/1	c0001	1638	288	40	60	130	14	42	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0002	1638	23	14	7	0	0	2	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0003	1638	15	0	6	9	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0004	1638	10	10	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0005	1638	8	8	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0006	1638	5	4	0	0	0	1	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0007	1638	4	4	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0008	1638	4	0	0	4	0	0	copy fasta	MIER2	chr19	300573	349796