JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MIER2_chr19_300573_349796	0/0	c0009	1638	3	2	1	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0010	1638	2	0	2	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0011	1638	2	0	2	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0012	1638	2	1	0	0	0	1	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0013	1638	2	2	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0014	1638	2	2	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0015	1638	2	2	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0016	1638	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0017	1638	1	0	0	0	1	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0018	1638	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0019	1638	1	0	1	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0020	1638	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0021	1638	1	1	0	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0022	1638	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0023	1638	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0024	1638	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0025	1638	1	0	0	1	0	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0026	1638	1	0	0	0	1	0	copy fasta	MIER2	chr19	300573	349796
MIER2_chr19_300573_349796	0/0	c0027	1638	1	0	1	0	0	0	copy fasta	MIER2	chr19	300573	349796
MIER3_chr5_56914603_56957123	1/1	c0001	1653	176	25	36	84	6	23	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0002	1653	174	23	26	100	4	21	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0003	1653	21	20	1	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0004	1653	7	7	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0005	1653	6	1	4	0	0	1	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0006	1653	5	4	1	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0007	1653	2	0	0	2	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0008	1653	1	1	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0009	1653	1	0	0	0	0	1	copy fasta	MIER3	chr5	56914603	56957123
MIER3_chr5_56914603_56957123	0/0	c0010	1653	1	1	0	0	0	0	copy fasta	MIER3	chr5	56914603	56957123
MIF4GD_chr17_75261228_75276231	1/1	c0001	669	287	76	53	104	14	38	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	c0002	669	47	18	9	12	0	8	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	c0003	669	1	0	0	1	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF4GD_chr17_75261228_75276231	0/0	c0004	669	1	0	0	1	0	0	copy fasta	MIF4GD	chr17	75261228	75276231
MIF_chr22_23889383_23900223	0/1	c0001	348	440	98	70	207	14	50	copy fasta	MIF	chr22	23889383	23900223
MIF_chr22_23889383_23900223	0/0	c0002	348	1	0	0	1	0	0	copy fasta	MIF	chr22	23889383	23900223
MIGA1_chr1_77774649_77884540	1/1	c0001	1803	276	72	44	111	10	37	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	c0002	1803	2	2	0	0	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	c0003	1803	1	0	0	1	0	0	copy fasta	MIGA1	chr1	77774649	77884540
MIGA1_chr1_77774649_77884540	0/0	c0004	1803	1	0	0	0	0	1	copy fasta	MIGA1	chr1	77774649	77884540
MIGA2_chr9_129031626_129077082	1/1	c0001	1782	177	46	40	58	5	26	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0002	1782	71	23	13	32	1	2	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0003	1782	16	10	0	3	0	3	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0004	1782	9	1	0	5	0	3	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0005	1782	5	5	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0006	1782	5	0	0	5	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0007	1782	4	3	1	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0008	1782	3	0	0	3	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0009	1782	2	2	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0010	1782	2	0	2	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0011	1782	1	0	0	0	0	1	copy fasta	MIGA2	chr9	129031626	129077082