JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MIGA2_chr9_129031626_129077082	0/0	c0012	1782	1	1	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0013	1782	1	0	0	1	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0014	1782	1	0	0	1	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0015	1782	1	0	0	0	0	1	copy fasta	MIGA2	chr9	129031626	129077082
MIGA2_chr9_129031626_129077082	0/0	c0016	1782	1	1	0	0	0	0	copy fasta	MIGA2	chr9	129031626	129077082
MIIP_chr1_12014498_12037045	0/1	c0001	1167	167	52	25	69	6	14	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	1/0	c0002	1167	144	13	27	76	6	21	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0003	1167	22	2	8	6	1	5	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0004	1167	19	12	2	1	1	3	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0005	1167	16	0	0	16	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0006	1167	10	0	0	9	0	1	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0007	1168	6	2	0	3	0	1	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0008	1167	6	6	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0009	1167	4	4	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0010	1168	3	0	0	3	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0011	1168	2	0	0	2	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0012	1167	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0013	1167	1	0	1	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0014	1167	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0015	1167	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0016	1167	1	0	1	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0017	1167	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0018	1167	1	0	0	0	1	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0019	1167	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0020	1167	1	0	1	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0021	1167	1	1	0	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0022	1167	1	0	0	0	0	1	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0023	1167	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0024	1167	1	0	1	0	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0025	1167	1	0	0	1	0	0	copy fasta	MIIP	chr1	12014498	12037045
MIIP_chr1_12014498_12037045	0/0	c0026	1167	1	0	0	0	1	0	copy fasta	MIIP	chr1	12014498	12037045
MILR1_chr17_64444115_64473643	1/1	c0001	1032	363	76	66	161	13	45	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0002	1032	22	20	2	0	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0003	1032	2	0	2	0	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0004	1032	1	0	0	0	1	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0005	1032	1	0	0	1	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0006	1032	1	0	1	0	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0007	1032	1	0	1	0	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0008	1032	1	0	0	1	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0009	1019	1	0	0	1	0	0	copy fasta	MILR1	chr17	64444115	64473643
MILR1_chr17_64444115_64473643	0/0	c0010	1032	1	0	0	0	0	1	copy fasta	MILR1	chr17	64444115	64473643
MINAR1_chr15_79427336_79477304	0/0	c0001	2751	109	10	34	46	3	16	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0002	2751	81	7	20	41	8	5	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/1	c0003	2751	50	21	10	10	0	8	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0004	2751	48	0	0	47	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0005	2751	34	18	2	12	0	2	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0006	2751	13	12	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0007	2751	10	8	2	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	1/0	c0008	2751	9	0	0	4	1	3	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0009	2751	5	5	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304