JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MINAR1_chr15_79427336_79477304	0/0	c0010	2751	5	4	0	0	1	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0011	2751	3	3	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0012	2751	2	0	2	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0013	2751	2	0	2	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0014	2751	2	2	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0015	2751	2	2	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0016	2751	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0017	2751	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0018	2751	1	0	0	0	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0019	2751	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0020	2751	1	0	0	0	1	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0021	2751	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0022	2751	1	0	0	0	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0023	2751	1	0	1	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0024	2751	1	0	0	0	0	1	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0025	2751	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0026	2751	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0027	2751	1	0	0	1	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0028	2751	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0029	2751	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR1_chr15_79427336_79477304	0/0	c0030	2751	1	1	0	0	0	0	copy fasta	MINAR1	chr15	79427336	79477304
MINAR2_chr5_129743094_129771732	1/1	c0001	573	429	94	74	203	12	44	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	c0002	573	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	c0003	573	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	c0004	573	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	c0005	573	1	1	0	0	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINAR2_chr5_129743094_129771732	0/0	c0006	573	1	0	0	1	0	0	copy fasta	MINAR2	chr5	129743094	129771732
MINDY1_chr1_150991835_151011902	0/1	c0001	1410	391	61	74	196	16	43	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	1/0	c0002	1410	19	18	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0003	1410	16	11	5	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0004	1410	2	2	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0005	1410	1	1	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0006	1410	1	0	1	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0007	1410	1	0	1	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0008	1410	1	0	0	1	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0009	1410	1	0	0	1	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0010	1410	1	0	0	0	0	1	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0011	1410	1	1	0	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY1_chr1_150991835_151011902	0/0	c0012	1410	1	0	1	0	0	0	copy fasta	MINDY1	chr1	150991835	151011902
MINDY2_chr15_58766302_58866900	1/1	c0001	1866	352	65	63	171	11	40	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0002	1866	17	17	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0003	1866	3	1	2	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0004	1866	3	0	0	3	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0005	1866	2	2	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0006	1866	2	2	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0007	1866	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0008	1866	1	1	0	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0009	1866	1	0	1	0	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0010	1866	1	0	0	1	0	0	copy fasta	MINDY2	chr15	58766302	58866900
MINDY2_chr15_58766302_58866900	0/0	c0011	1866	1	0	0	0	1	0	copy fasta	MINDY2	chr15	58766302	58866900