JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MINDY3_chr10_15773174_15865507	1/1	c0001	1338	230	74	43	69	12	30	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	c0002	1338	8	6	2	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	c0003	1338	3	0	0	3	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY3_chr10_15773174_15865507	0/0	c0004	1338	1	0	1	0	0	0	copy fasta	MINDY3	chr10	15773174	15865507
MINDY4B_chr3_150865376_150910439	1/1	c0001	1383	309	33	62	166	10	36	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0002	1383	90	46	13	22	4	5	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0003	1383	12	6	1	2	0	3	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0004	1383	3	2	0	0	0	1	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0005	1383	2	2	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0006	1383	2	2	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0007	1383	2	2	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0008	1383	2	2	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0009	1383	2	0	0	2	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0010	1383	2	0	0	2	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0011	1383	1	1	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0012	1383	1	0	0	1	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0013	1383	1	1	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0014	1383	1	1	0	0	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0015	1383	1	0	0	1	0	0	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4B_chr3_150865376_150910439	0/0	c0016	1383	1	0	0	0	0	1	copy fasta	MINDY4B	chr3	150865376	150910439
MINDY4_chr7_30766417_30897387	1/0	c0001	2274	48	1	12	28	2	4	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0002	2274	37	10	4	14	0	9	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0003	2274	33	5	1	26	0	1	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0004	2274	27	4	10	2	4	7	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0005	2274	17	0	0	16	0	1	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0006	2274	14	0	1	11	0	2	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0007	2274	12	1	2	7	2	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0008	2274	12	12	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0009	2274	11	0	0	10	0	1	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0010	2274	9	6	1	0	0	2	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0011	2274	8	8	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0012	2274	7	2	0	3	0	2	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0013	2274	6	5	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0014	2274	5	5	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0015	2274	4	0	0	2	0	2	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0016	2274	4	2	0	2	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0017	2274	4	3	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0018	2274	3	3	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0019	2274	2	1	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0020	2274	2	2	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/1	c0021	2274	2	0	0	0	0	1	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0022	2274	2	2	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0023	2274	2	2	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0024	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0025	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0026	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0027	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0028	2274	1	0	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0029	2274	1	0	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0030	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387