JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MINDY4_chr7_30766417_30897387	0/0	c0031	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0032	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0033	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0034	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0035	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0036	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0037	2274	1	0	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0038	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0039	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0040	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0041	2274	1	0	1	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0042	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0043	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0044	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0045	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0046	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0047	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0048	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0049	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0050	2274	1	1	0	0	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0051	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINDY4_chr7_30766417_30897387	0/0	c0052	2274	1	0	0	1	0	0	copy fasta	MINDY4	chr7	30766417	30897387
MINK1_chr17_4828340_4903061	0/0	c0001	3999	147	48	31	54	6	8	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	1/0	c0002	3999	77	15	24	17	5	15	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0003	3999	63	1	6	40	1	15	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/1	c0004	3999	24	1	4	16	2	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0005	3999	17	16	1	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0006	3999	4	0	0	4	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0007	3999	3	0	0	3	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0008	3999	3	3	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0009	3999	2	0	1	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0010	3999	2	0	2	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0011	3999	2	2	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0012	3999	2	0	2	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0013	3999	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0014	3999	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0015	3999	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0016	3999	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0017	3999	1	0	0	0	0	1	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0018	3999	1	0	1	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0019	3999	1	0	0	0	0	1	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0020	3999	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0021	3999	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0022	3999	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0023	3999	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0024	4014	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0025	3999	1	1	0	0	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINK1_chr17_4828340_4903061	0/0	c0026	4123	1	0	0	1	0	0	copy fasta	MINK1	chr17	4828340	4903061
MINPP1_chr10_87499893_87558461	1/1	c0001	1464	399	88	77	188	10	34	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	c0002	1464	7	6	1	0	0	0	copy fasta	MINPP1	chr10	87499893	87558461