JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MINPP1_chr10_87499893_87558461	0/0	c0003	1464	1	0	0	1	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	c0004	1464	1	1	0	0	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	c0005	1464	1	0	0	0	0	1	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	c0006	1464	1	0	0	0	0	1	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	c0007	1464	1	0	0	1	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MINPP1_chr10_87499893_87558461	0/0	c0008	1464	1	1	0	0	0	0	copy fasta	MINPP1	chr10	87499893	87558461
MIOS_chr7_7561884_7613932	0/1	c0001	2628	192	39	40	87	11	14	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0002	2628	64	15	6	34	1	8	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0003	2628	30	10	4	12	0	4	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0004	2628	11	11	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0005	2628	7	1	2	1	0	3	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0006	2628	6	0	0	3	0	3	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	1/0	c0007	2628	4	0	2	0	0	1	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0008	2628	3	3	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0009	2628	3	0	2	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0010	2628	2	2	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0011	2628	2	2	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0012	2628	1	0	0	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0013	2628	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0014	2628	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0015	2628	1	1	0	0	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0016	2628	1	0	0	1	0	0	copy fasta	MIOS	chr7	7561884	7613932
MIOS_chr7_7561884_7613932	0/0	c0017	2628	1	0	0	0	0	1	copy fasta	MIOS	chr7	7561884	7613932
MIOX_chr22_50481859_50495648	1/1	c0001	858	265	63	54	99	12	35	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0002	858	110	12	20	66	1	11	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0003	858	23	16	3	4	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0004	858	20	3	4	8	3	2	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0005	858	5	0	0	4	0	1	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0006	858	3	0	1	0	2	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0007	858	2	0	0	2	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0008	834	1	0	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0009	858	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0010	858	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0011	858	1	0	0	0	0	1	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0012	858	1	0	0	1	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0013	858	1	1	0	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0014	858	1	0	1	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIOX_chr22_50481859_50495648	0/0	c0015	858	1	1	0	0	0	0	copy fasta	MIOX	chr22	50481859	50495648
MIPEP_chr13_23725189_23894400	0/0	c0001	2142	260	62	46	121	5	26	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/1	c0002	2142	14	4	5	0	1	3	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	1/0	c0003	2142	9	8	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0004	2142	3	3	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0005	2142	3	3	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0006	2142	3	3	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0007	2142	2	0	2	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0008	2142	2	0	0	2	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0009	2142	2	2	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0010	2142	1	1	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0011	2142	1	1	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0012	2142	1	0	0	1	0	0	copy fasta	MIPEP	chr13	23725189	23894400