JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MIPEP_chr13_23725189_23894400	0/0	c0013	2142	1	1	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0014	2142	1	1	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0015	2142	1	0	1	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0016	2142	1	0	0	0	0	1	copy fasta	MIPEP	chr13	23725189	23894400
MIPEP_chr13_23725189_23894400	0/0	c0017	2142	1	1	0	0	0	0	copy fasta	MIPEP	chr13	23725189	23894400
MIP_chr12_56444502_56459657	1/1	c0001	792	412	88	72	195	15	40	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	c0002	792	16	0	0	13	1	2	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	c0003	792	3	1	0	2	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	c0004	792	2	2	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	c0005	792	1	0	0	1	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	c0006	792	1	1	0	0	0	0	copy fasta	MIP	chr12	56444502	56459657
MIP_chr12_56444502_56459657	0/0	c0007	792	1	0	0	1	0	0	copy fasta	MIP	chr12	56444502	56459657
MIS12_chr17_5481566_5495811	1/1	c0001	618	400	89	72	182	16	39	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	c0002	618	32	0	2	27	0	3	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	c0003	618	5	5	0	0	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS12_chr17_5481566_5495811	0/0	c0004	618	1	0	0	1	0	0	copy fasta	MIS12	chr17	5481566	5495811
MIS18A_chr21_32263228_32284049	1/1	c0001	702	385	83	68	183	9	40	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	c0002	702	8	8	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	c0003	702	5	3	2	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	c0004	702	2	2	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	c0005	702	1	1	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	c0006	702	1	1	0	0	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	c0007	702	1	0	0	0	1	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18A_chr21_32263228_32284049	0/0	c0008	702	1	0	0	1	0	0	copy fasta	MIS18A	chr21	32263228	32284049
MIS18BP1_chr14_45198190_45258202	1/1	c0001	3399	119	20	22	57	3	15	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0002	3399	44	3	8	25	3	5	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0003	3399	34	33	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0004	3399	9	9	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0005	3399	8	5	1	0	1	1	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0006	3399	6	5	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0007	3399	5	0	1	4	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0008	3399	3	0	2	0	1	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0009	3399	3	3	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0010	3399	2	2	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0011	3399	2	2	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0012	3399	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0013	3399	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0014	3399	1	0	0	1	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0015	3399	1	0	0	1	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0016	3399	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0017	3399	1	0	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0018	3399	1	0	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0019	3399	1	0	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0020	3399	1	0	1	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0021	3399	1	1	0	0	0	0	copy fasta	MIS18BP1	chr14	45198190	45258202
MIS18BP1_chr14_45198190_45258202	0/0	c0022	3399	1	0	0	0	0	1	copy fasta	MIS18BP1	chr14	45198190	45258202
MISFA_chr11_18594789_18608883	1/1	c0001	180	452	96	78	214	18	44	copy fasta	MISFA	chr11	18594789	18608883
MISP3_chr19_14067786_14080062	0/0	c0001	660	178	44	33	74	7	20	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	1/1	c0002	660	174	23	35	84	7	23	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	c0003	660	23	21	2	0	0	0	copy fasta	MISP3	chr19	14067786	14080062