JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD61_chr7_6026376_6041552	0/0	c0004	1257	25	0	0	24	0	1	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0005	1257	15	0	0	15	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0006	1257	13	13	0	0	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0007	1257	2	2	0	0	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0008	1257	2	2	0	0	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0009	1257	2	2	0	0	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0010	1257	1	0	0	0	0	1	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0011	1257	1	0	0	0	0	1	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0012	1257	1	1	0	0	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0013	1257	1	1	0	0	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0014	1257	1	0	0	1	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD61_chr7_6026376_6041552	0/0	c0015	1257	1	1	0	0	0	0	copy fasta	ANKRD61	chr7	6026376	6041552
ANKRD62_chr18_12088843_12134764	0/0	c0001	2754	108	2	19	77	3	7	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	1/0	c0002	2754	85	33	12	27	5	7	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0003	2754	84	13	21	35	1	14	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/1	c0004	2754	63	20	12	14	5	11	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0005	2754	9	0	0	9	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0006	2754	7	4	2	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0007	2754	7	7	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0008	2754	6	5	1	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0009	2754	5	4	1	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0010	2754	3	3	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0011	2754	3	0	0	3	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0012	2754	2	2	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0013	2754	1	1	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0014	2754	1	0	0	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0015	2754	1	1	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0016	2754	1	0	0	0	0	1	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0017	2754	1	1	0	0	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0018	2754	1	0	0	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0019	2754	1	0	0	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0020	2754	1	0	0	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0021	2754	1	0	0	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD62_chr18_12088843_12134764	0/0	c0022	2754	1	0	0	1	0	0	copy fasta	ANKRD62	chr18	12088843	12134764
ANKRD63_chr15_40273372_40288064	0/1	c0001	1143	221	45	47	73	15	40	copy fasta	ANKRD63	chr15	40273372	40288064
ANKRD63_chr15_40273372_40288064	0/0	c0002	1143	172	38	19	106	3	6	copy fasta	ANKRD63	chr15	40273372	40288064
ANKRD63_chr15_40273372_40288064	0/0	c0003	1143	5	5	0	0	0	0	copy fasta	ANKRD63	chr15	40273372	40288064
ANKRD63_chr15_40273372_40288064	0/0	c0004	1152	5	5	0	0	0	0	copy fasta	ANKRD63	chr15	40273372	40288064
ANKRD63_chr15_40273372_40288064	0/0	c0005	1143	3	3	0	0	0	0	copy fasta	ANKRD63	chr15	40273372	40288064
ANKRD63_chr15_40273372_40288064	1/0	c0006	1143	2	1	0	0	0	0	copy fasta	ANKRD63	chr15	40273372	40288064
ANKRD63_chr15_40273372_40288064	0/0	c0007	1143	1	0	0	1	0	0	copy fasta	ANKRD63	chr15	40273372	40288064
ANKRD63_chr15_40273372_40288064	0/0	c0008	1143	1	1	0	0	0	0	copy fasta	ANKRD63	chr15	40273372	40288064
ANKRD65_chr1_1413420_1426276	1/1	c0001	1200	65	11	11	28	5	8	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0002	1200	20	13	3	2	1	1	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0003	1200	19	4	0	13	0	2	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0004	1200	15	15	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0005	1200	4	4	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0006	1200	2	0	0	2	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0007	1200	2	2	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0008	1200	2	2	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276