JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MISP3_chr19_14067786_14080062	0/0	c0004	660	1	0	0	0	0	1	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	c0005	660	1	0	1	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP3_chr19_14067786_14080062	0/0	c0006	660	1	0	1	0	0	0	copy fasta	MISP3	chr19	14067786	14080062
MISP_chr19_746112_769318	1/1	c0001	2040	221	43	55	78	9	34	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0002	2040	76	1	2	71	0	2	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0003	2040	11	2	7	0	1	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0004	2040	9	0	0	9	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0005	2040	8	6	0	2	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0006	2040	7	0	3	0	4	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0007	2040	7	6	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0008	2040	7	6	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0009	2040	6	5	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0010	2040	6	2	1	3	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0011	2040	6	0	0	6	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0012	2040	6	0	5	0	0	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0013	2040	5	0	1	4	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0014	2040	5	4	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0015	2040	3	3	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0016	2040	3	0	0	3	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0017	2040	2	2	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0018	2040	2	2	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0019	2040	2	0	1	0	0	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0020	2040	2	2	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0021	2040	2	2	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0022	2040	2	0	0	2	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0023	2040	2	0	0	2	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0024	2040	2	1	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0025	2040	2	2	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0026	2040	2	0	0	0	2	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0027	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0028	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0029	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0030	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0031	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0032	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0033	2040	1	0	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0034	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0035	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0036	2040	1	0	0	0	0	1	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0037	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0038	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0039	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0040	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0041	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0042	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0043	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0044	2040	1	0	1	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0045	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0046	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0047	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318