JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MISP_chr19_746112_769318	0/0	c0048	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0049	2040	1	0	0	1	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0050	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0051	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MISP_chr19_746112_769318	0/0	c0052	2040	1	1	0	0	0	0	copy fasta	MISP	chr19	746112	769318
MITD1_chr2_99164263_99186058	1/1	c0001	750	409	91	80	178	14	44	copy fasta	MITD1	chr2	99164263	99186058
MITD1_chr2_99164263_99186058	0/0	c0002	750	3	0	0	3	0	0	copy fasta	MITD1	chr2	99164263	99186058
MITD1_chr2_99164263_99186058	0/0	c0003	750	2	1	0	1	0	0	copy fasta	MITD1	chr2	99164263	99186058
MITF_chr3_69734464_69973332	1/1	c0001	1581	169	57	39	48	2	21	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	c0002	1581	4	4	0	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	c0003	1581	3	0	0	0	0	3	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	c0004	1581	1	0	1	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69734464_69973332	0/0	c0005	1581	1	1	0	0	0	0	copy fasta	MITF	chr3	69734464	69973332
MITF_chr3_69931592_69973332	1/1	c0001	1260	375	91	67	170	12	33	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	c0002	1260	3	0	0	0	0	3	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	c0003	1260	2	0	0	2	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	c0004	1260	2	2	0	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	c0005	1260	1	0	1	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	c0006	1260	1	0	0	1	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	c0007	1260	1	0	0	1	0	0	copy fasta	MITF	chr3	69931592	69973332
MITF_chr3_69931592_69973332	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	MITF	chr3	69931592	69973332
MIURF_chr22_39499231_39509443	1/1	c0001	213	394	89	74	161	18	50	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	c0002	213	4	4	0	0	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	c0003	213	4	4	0	0	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	c0004	213	2	0	2	0	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	c0005	213	1	1	0	0	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIURF_chr22_39499231_39509443	0/0	c0006	213	1	0	0	1	0	0	copy fasta	MIURF	chr22	39499231	39509443
MIX23_chr3_122354591_122388231	1/1	c0001	435	420	96	68	196	16	42	copy fasta	MIX23	chr3	122354591	122388231
MIXL1_chr1_226218664_226232060	1/1	c0001	699	371	63	75	174	14	43	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	c0002	699	24	23	0	0	0	1	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	c0003	699	18	0	0	17	0	1	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	c0004	700	7	0	1	3	0	3	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	c0005	699	4	0	0	4	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	c0006	699	2	2	0	0	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	c0007	699	1	0	0	1	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MIXL1_chr1_226218664_226232060	0/0	c0008	699	1	0	0	1	0	0	copy fasta	MIXL1	chr1	226218664	226232060
MKI67_chr10_128091659_128131423	0/0	c0001	9771	45	0	11	26	2	6	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/1	c0002	9771	43	2	6	25	3	6	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0003	9771	37	5	8	21	0	3	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0004	9771	34	14	6	9	0	5	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0005	9771	33	1	0	30	0	2	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0006	9771	30	7	10	7	1	5	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0007	9771	24	6	1	17	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0008	9771	13	8	3	0	1	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0009	9771	7	1	4	0	1	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0010	9771	6	5	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0011	9771	6	6	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0012	9771	5	0	2	3	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0013	9771	5	0	5	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0014	9771	4	0	1	3	0	0	copy fasta	MKI67	chr10	128091659	128131423