JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MKI67_chr10_128091659_128131423	0/0	c0065	9771	1	0	0	0	0	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0066	9771	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0067	9771	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0068	9771	1	0	0	0	1	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0069	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0070	9771	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0071	9771	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0072	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0073	9771	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0074	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0075	9771	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0076	9771	1	0	0	0	1	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0077	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0078	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0079	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0080	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0081	9771	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0082	9771	1	0	0	0	0	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0083	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0084	9771	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0085	9771	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0086	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0087	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0088	9771	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0089	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0090	9771	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0091	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0092	9771	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0093	9771	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0094	9771	1	1	0	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0095	9771	1	0	1	0	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0096	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0097	9771	1	0	0	0	0	1	copy fasta	MKI67	chr10	128091659	128131423
MKI67_chr10_128091659_128131423	0/0	c0098	9771	1	0	0	1	0	0	copy fasta	MKI67	chr10	128091659	128131423
MKKS_chr20_10396009_10439222	1/1	c0001	1713	278	52	56	121	12	35	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	c0002	1713	85	15	9	51	2	8	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	c0003	1713	20	18	1	0	0	1	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	c0004	1713	3	3	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	c0005	1713	2	0	0	2	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	c0006	1713	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKKS_chr20_10396009_10439222	0/0	c0007	1713	1	1	0	0	0	0	copy fasta	MKKS	chr20	10396009	10439222
MKLN1_chr7_131322876_131501632	1/1	c0001	2208	304	67	49	140	12	34	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	c0002	2208	8	7	1	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	c0003	2208	7	7	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKLN1_chr7_131322876_131501632	0/0	c0004	2208	1	1	0	0	0	0	copy fasta	MKLN1	chr7	131322876	131501632
MKNK1_chr1_46552407_46609268	1/1	c0001	1239	324	78	53	143	10	38	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	c0002	1239	8	0	2	3	0	3	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	c0003	1239	5	0	0	5	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	c0004	1239	3	0	0	3	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	c0005	1239	2	0	1	0	0	1	copy fasta	MKNK1	chr1	46552407	46609268