JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MKNK1_chr1_46552407_46609268	0/0	c0006	1239	1	0	1	0	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	c0007	1239	1	0	0	1	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	c0008	1239	1	0	1	0	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK1_chr1_46552407_46609268	0/0	c0009	1239	1	0	0	1	0	0	copy fasta	MKNK1	chr1	46552407	46609268
MKNK2_chr19_2032471_2056244	1/1	c0001	1398	363	90	67	148	15	41	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0002	1398	44	0	8	30	0	6	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0003	1398	2	0	2	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0004	1398	2	0	0	2	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0005	1398	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0006	1398	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0007	1398	1	0	0	0	1	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0008	1398	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0009	1398	1	0	0	0	0	1	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0010	1398	1	0	1	0	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKNK2_chr19_2032471_2056244	0/0	c0011	1398	1	0	0	1	0	0	copy fasta	MKNK2	chr19	2032471	2056244
MKRN1_chr7_140448033_140484505	1/0	c0001	1449	251	22	53	134	8	33	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0002	1449	98	57	7	26	2	6	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/1	c0003	1449	65	4	12	32	8	8	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0004	1449	5	4	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0005	1449	4	4	0	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0006	1449	3	0	0	3	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0007	1449	3	3	0	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0008	1449	1	0	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0009	1449	1	0	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0010	1449	1	0	0	0	0	1	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0011	1449	1	0	1	0	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN1_chr7_140448033_140484505	0/0	c0012	1459	1	0	0	1	0	0	copy fasta	MKRN1	chr7	140448033	140484505
MKRN2OS_chr3_12534776_12550499	1/1	c0001	672	384	95	71	160	16	40	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	c0002	672	7	0	5	2	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	c0003	672	1	1	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	c0004	672	1	1	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	c0005	672	1	1	0	0	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	c0006	672	1	0	0	1	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2OS_chr3_12534776_12550499	0/0	c0007	672	1	0	0	1	0	0	copy fasta	MKRN2OS	chr3	12534776	12550499
MKRN2_chr3_12552087_12588713	0/0	c0001	1251	177	83	46	27	8	13	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	1/1	c0002	1251	142	8	34	73	6	19	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	c0003	1251	5	5	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	c0004	1251	2	0	0	2	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	c0005	1251	1	1	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN2_chr3_12552087_12588713	0/0	c0006	1251	1	1	0	0	0	0	copy fasta	MKRN2	chr3	12552087	12588713
MKRN3_chr15_23560674_23573044	1/0	c0001	1524	321	69	61	156	7	27	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/1	c0002	1524	88	15	14	39	7	12	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0003	1524	2	2	0	0	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0004	1524	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0005	1524	1	1	0	0	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0006	1524	1	0	0	0	0	1	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0007	1524	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0008	1524	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0009	1524	1	1	0	0	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0010	1524	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044