JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MKRN3_chr15_23560674_23573044	0/0	c0011	1524	1	0	1	0	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKRN3_chr15_23560674_23573044	0/0	c0012	1524	1	0	0	1	0	0	copy fasta	MKRN3	chr15	23560674	23573044
MKS1_chr17_58200441_58224255	1/1	c0001	1680	286	66	40	134	13	31	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0002	1680	28	18	4	5	0	1	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0003	1680	2	2	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0004	1680	2	0	0	2	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0005	1680	2	2	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0006	1680	1	0	0	1	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0007	1680	1	0	0	1	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0008	1680	1	0	0	1	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0009	1680	1	1	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0010	1680	1	1	0	0	0	0	copy fasta	MKS1	chr17	58200441	58224255
MKS1_chr17_58200441_58224255	0/0	c0011	1680	1	0	0	0	1	0	copy fasta	MKS1	chr17	58200441	58224255
MKX_chr10_27667874_27750819	1/1	c0001	1059	270	53	36	151	6	22	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	c0002	1059	72	26	17	17	4	8	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	c0003	1059	5	3	2	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	c0004	1059	2	0	0	2	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	c0005	1059	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	c0006	1059	1	0	1	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	c0007	1059	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	c0008	1059	1	0	0	1	0	0	copy fasta	MKX	chr10	27667874	27750819
MKX_chr10_27667874_27750819	0/0	c0009	1059	1	1	0	0	0	0	copy fasta	MKX	chr10	27667874	27750819
MLANA_chr9_5885889_5915606	1/1	c0001	357	360	52	64	189	13	40	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	c0002	357	62	40	6	9	1	6	copy fasta	MLANA	chr9	5885889	5915606
MLANA_chr9_5885889_5915606	0/0	c0003	357	2	0	0	2	0	0	copy fasta	MLANA	chr9	5885889	5915606
MLC1_chr22_50054391_50090426	1/1	c0001	1134	198	45	44	84	8	15	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0002	1167	4	0	2	1	0	1	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0003	1134	2	1	1	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0004	1134	2	1	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0005	1134	1	1	0	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0006	1134	1	0	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0007	1134	1	0	0	1	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0008	1166	1	0	0	0	0	1	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0009	1134	1	0	1	0	0	0	copy fasta	MLC1	chr22	50054391	50090426
MLC1_chr22_50054391_50090426	0/0	c0010	1134	1	0	0	0	0	1	copy fasta	MLC1	chr22	50054391	50090426
MLEC_chr12_120682149_120706859	1/1	c0001	879	406	93	69	184	18	40	copy fasta	MLEC	chr12	120682149	120706859
MLEC_chr12_120682149_120706859	0/0	c0002	879	2	1	1	0	0	0	copy fasta	MLEC	chr12	120682149	120706859
MLF1_chr3_158566194_158611456	1/1	c0001	852	147	13	31	76	7	18	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0002	852	124	13	19	73	7	12	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0003	852	88	45	16	15	4	8	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0004	852	9	9	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0005	852	5	5	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0006	852	3	3	0	0	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0007	852	1	0	0	0	0	1	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0008	852	1	0	0	1	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0009	852	1	0	0	0	0	1	copy fasta	MLF1	chr3	158566194	158611456
MLF1_chr3_158566194_158611456	0/0	c0010	852	1	0	0	1	0	0	copy fasta	MLF1	chr3	158566194	158611456
MLF2_chr12_6742996_6758141	1/1	c0001	747	375	80	66	173	15	39	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	c0002	747	42	3	10	27	1	1	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	c0003	747	7	5	2	0	0	0	copy fasta	MLF2	chr12	6742996	6758141