JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MLF2_chr12_6742996_6758141	0/0	c0004	747	1	0	0	0	0	1	copy fasta	MLF2	chr12	6742996	6758141
MLF2_chr12_6742996_6758141	0/0	c0005	747	1	0	0	0	0	1	copy fasta	MLF2	chr12	6742996	6758141
MLH1_chr3_36988518_37055846	1/1	c0001	2271	215	55	44	82	7	25	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0002	2271	33	4	9	12	2	6	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0003	2271	9	7	2	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0004	2271	8	8	0	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0005	2271	7	7	0	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0006	2271	2	0	0	2	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0007	2271	2	2	0	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0008	2271	1	0	0	1	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0009	2271	1	1	0	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0010	2271	1	0	1	0	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0011	2271	1	0	0	1	0	0	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0012	2271	1	0	0	0	0	1	copy fasta	MLH1	chr3	36988518	37055846
MLH1_chr3_36988518_37055846	0/0	c0013	2271	1	0	0	0	1	0	copy fasta	MLH1	chr3	36988518	37055846
MLH3_chr14_75008775_75056467	0/1	c0001	4362	102	16	24	44	2	15	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0002	4362	85	27	17	23	3	15	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0003	4362	14	0	9	5	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0004	4362	12	12	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0005	4362	8	8	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0006	4362	5	4	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	1/0	c0007	4362	5	2	2	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0008	4362	4	1	0	3	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0009	4362	4	4	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0010	4362	3	0	0	0	1	2	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0011	4362	2	1	0	0	0	1	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0012	4362	2	0	0	2	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0013	4362	2	2	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0014	4362	1	0	0	1	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0015	4362	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0016	4362	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0017	4362	1	0	0	1	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0018	4362	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0019	4362	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0020	4362	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0021	4362	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0022	4362	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0023	4362	1	0	0	0	0	1	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0024	4362	1	0	1	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0025	4362	1	0	0	1	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0026	4362	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLH3_chr14_75008775_75056467	0/0	c0027	4362	1	1	0	0	0	0	copy fasta	MLH3	chr14	75008775	75056467
MLIP_chr6_54106443_54271280	0/0	c0001	2982	93	17	22	40	2	12	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/1	c0002	2982	37	2	3	25	2	4	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0003	2982	36	7	11	9	4	5	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0004	2982	10	10	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	1/0	c0005	2982	9	4	3	1	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0006	2982	7	7	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0007	2982	7	0	5	2	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0008	2982	7	6	1	0	0	0	copy fasta	MLIP	chr6	54106443	54271280