JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MLIP_chr6_54106443_54271280	0/0	c0009	2982	5	0	0	5	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0010	2982	4	4	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0011	2982	4	3	0	0	0	1	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0012	2982	3	1	2	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0013	2982	3	0	0	1	0	2	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0014	2982	3	3	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0015	2982	2	2	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0016	2982	2	0	0	2	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0017	2982	2	0	0	2	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0018	2982	2	2	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0019	2982	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0020	2982	1	0	0	1	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0021	2982	1	0	0	1	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0022	2982	1	0	1	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0023	2982	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0024	2982	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0025	2982	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0026	2982	1	0	0	0	0	1	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0027	2982	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0028	2982	1	0	0	1	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0029	2982	1	1	0	0	0	0	copy fasta	MLIP	chr6	54106443	54271280
MLIP_chr6_54106443_54271280	0/0	c0030	2982	1	0	0	0	0	1	copy fasta	MLIP	chr6	54106443	54271280
MLKL_chr16_74666855_74705862	1/1	c0001	1416	408	85	71	190	14	46	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0002	1416	5	0	5	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0003	1416	4	0	0	4	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0004	1416	3	0	2	0	0	1	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0005	1416	3	3	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0006	1416	3	3	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0007	1416	2	0	0	0	2	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0008	1416	2	2	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0009	1416	2	2	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0010	1416	2	2	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0011	1416	1	0	0	0	0	1	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0012	1416	1	0	0	1	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0013	1416	1	1	0	0	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLKL_chr16_74666855_74705862	0/0	c0014	1416	1	0	0	1	0	0	copy fasta	MLKL	chr16	74666855	74705862
MLLT10_chr10_21529232_21748630	1/0	c0001	3207	119	34	38	29	3	14	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/1	c0002	3207	63	32	15	6	3	6	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	c0003	3207	3	3	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	c0004	3207	1	1	0	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	c0005	3219	1	0	1	0	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	c0006	3207	1	0	0	0	0	1	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	c0007	3207	1	0	0	0	0	1	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	c0008	3207	1	0	0	1	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	c0009	3222	1	0	0	1	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT10_chr10_21529232_21748630	0/0	c0010	3207	1	0	0	1	0	0	copy fasta	MLLT10	chr10	21529232	21748630
MLLT11_chr1_151055397_151074544	1/1	c0001	273	369	94	66	152	17	38	copy fasta	MLLT11	chr1	151055397	151074544
MLLT11_chr1_151055397_151074544	0/0	c0002	273	3	0	0	0	1	2	copy fasta	MLLT11	chr1	151055397	151074544
MLLT1_chr19_6205381_6284975	1/1	c0001	1680	236	77	50	68	7	32	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	c0002	1680	34	10	1	21	0	2	copy fasta	MLLT1	chr19	6205381	6284975