JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MLLT1_chr19_6205381_6284975	0/0	c0003	1680	5	0	2	2	1	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	c0004	1680	3	0	1	0	0	2	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	c0005	1680	3	3	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	c0006	1680	2	0	0	0	0	2	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	c0007	1680	1	0	0	1	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	c0008	1680	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT1_chr19_6205381_6284975	0/0	c0009	1680	1	1	0	0	0	0	copy fasta	MLLT1	chr19	6205381	6284975
MLLT3_chr9_20336669_20627499	1/0	c0001	1707	157	50	31	58	2	15	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/1	c0002	1707	12	5	0	4	0	2	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0003	1707	6	2	1	3	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0004	1713	2	0	1	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0005	1710	2	1	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0006	1707	2	1	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0007	1707	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0008	1710	1	1	0	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0009	1707	1	0	0	0	0	1	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0010	1707	1	0	1	0	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT3_chr9_20336669_20627499	0/0	c0011	1707	1	0	0	1	0	0	copy fasta	MLLT3	chr9	20336669	20627499
MLLT6_chr17_38700273_38734795	0/1	c0001	3282	236	46	47	107	8	27	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0002	3282	36	17	3	8	2	6	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0003	3282	10	10	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0004	3282	7	6	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0005	3282	6	0	0	6	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0006	3282	5	5	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0007	3282	2	2	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0008	3282	1	0	0	1	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0009	3282	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0010	3282	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0011	3282	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0012	3282	1	0	0	0	0	1	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0013	3282	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0014	3282	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0015	3282	1	1	0	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLLT6_chr17_38700273_38734795	0/0	c0016	3282	1	0	1	0	0	0	copy fasta	MLLT6	chr17	38700273	38734795
MLNR_chr13_49215338_49227377	1/1	c0001	1239	220	63	47	78	6	24	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	c0002	1239	163	33	19	87	6	18	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	c0003	1239	2	0	2	0	0	0	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	c0004	1239	1	0	0	0	0	1	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	c0005	1239	1	0	0	1	0	0	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	c0006	1239	1	0	0	1	0	0	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	c0007	1239	1	0	0	1	0	0	copy fasta	MLNR	chr13	49215338	49227377
MLNR_chr13_49215338_49227377	0/0	c0008	1239	1	0	0	0	0	1	copy fasta	MLNR	chr13	49215338	49227377
MLN_chr6_33789673_33809003	0/0	c0001	348	291	50	41	153	7	40	copy fasta	MLN	chr6	33789673	33809003
MLN_chr6_33789673_33809003	1/1	c0002	348	142	48	37	38	11	6	copy fasta	MLN	chr6	33789673	33809003
MLN_chr6_33789673_33809003	0/0	c0003	348	1	0	0	1	0	0	copy fasta	MLN	chr6	33789673	33809003
MLPH_chr2_237482251_237560322	1/1	c0001	1803	94	6	19	49	9	9	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	c0002	1803	47	3	13	25	1	5	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	c0003	1803	23	21	0	2	0	0	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	c0004	1803	13	4	1	5	1	2	copy fasta	MLPH	chr2	237482251	237560322
MLPH_chr2_237482251_237560322	0/0	c0005	1803	11	2	0	9	0	0	copy fasta	MLPH	chr2	237482251	237560322