JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD65_chr1_1413420_1426276	0/0	c0009	1200	2	2	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0010	1200	2	2	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0011	1200	2	1	1	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0012	1200	1	0	1	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0013	1200	1	0	0	0	0	1	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0014	1200	1	0	0	1	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0015	1200	1	0	1	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0016	1200	1	1	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0017	1200	1	0	0	1	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0018	1200	1	0	0	1	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0019	1200	1	1	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0020	1200	1	1	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0021	1200	1	0	1	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0022	1200	1	1	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0023	1200	1	1	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD65_chr1_1413420_1426276	0/0	c0024	1210	1	1	0	0	0	0	copy fasta	ANKRD65	chr1	1413420	1426276
ANKRD66_chr6_46741933_46764506	1/1	c0001	591	361	61	69	169	16	44	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	c0002	591	34	25	9	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	c0003	591	2	0	0	2	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	c0004	591	2	2	0	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	c0005	591	1	0	1	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	c0006	591	1	0	1	0	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD66_chr6_46741933_46764506	0/0	c0007	591	1	0	0	1	0	0	copy fasta	ANKRD66	chr6	46741933	46764506
ANKRD6_chr6_89428152_89638821	0/0	c0001	2184	66	17	12	29	1	7	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0002	2184	57	4	10	36	4	3	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0003	2184	32	11	5	7	3	6	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0004	2184	17	0	8	6	2	1	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/1	c0005	2184	15	4	4	0	0	6	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0006	2184	12	6	0	4	0	2	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0007	2184	11	2	4	0	3	2	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0008	2184	9	4	3	0	0	2	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0009	2184	7	0	0	7	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	1/0	c0010	2184	6	5	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0011	2184	6	4	1	0	1	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0012	2184	4	4	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0013	2184	4	3	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0014	2184	3	0	0	3	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0015	2184	2	1	1	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0016	2184	2	2	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0017	2184	2	0	0	0	0	2	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0018	2184	2	2	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0019	2184	2	0	2	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0020	2184	1	1	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0021	2184	1	1	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0022	2184	1	0	1	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0023	2184	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0024	2184	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0025	2184	1	0	0	0	0	1	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0026	2184	1	0	0	1	0	0	copy fasta	ANKRD6	chr6	89428152	89638821
ANKRD6_chr6_89428152_89638821	0/0	c0027	2184	1	1	0	0	0	0	copy fasta	ANKRD6	chr6	89428152	89638821