JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MLST8_chr16_2200454_2214453	0/0	c0004	981	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	c0005	981	1	1	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	c0006	981	1	1	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	c0007	981	1	1	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	c0008	981	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	c0009	981	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	c0010	981	1	1	0	0	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLST8_chr16_2200454_2214453	0/0	c0011	981	1	0	0	1	0	0	copy fasta	MLST8	chr16	2200454	2214453
MLXIPL_chr7_73588202_73629522	0/0	c0001	2559	192	51	55	55	9	22	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/1	c0002	2559	23	2	2	14	1	3	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0003	2559	11	0	3	0	4	4	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0004	2559	8	8	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	1/0	c0005	2559	6	0	2	0	0	3	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0006	2559	6	5	1	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0007	2559	5	5	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0008	2559	5	4	1	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0009	2559	4	0	2	0	0	2	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0010	2559	2	2	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0011	2559	2	0	0	0	0	2	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0012	2559	2	2	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0013	2559	2	2	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0014	2559	1	1	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0015	2559	1	1	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0016	2559	1	1	0	0	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0017	2559	1	0	0	0	0	1	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0018	2559	1	0	0	1	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0019	2559	1	0	0	0	0	1	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0020	2559	1	0	0	1	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIPL_chr7_73588202_73629522	0/0	c0021	2559	1	0	0	1	0	0	copy fasta	MLXIPL	chr7	73588202	73629522
MLXIP_chr12_122073756_122152344	1/0	c0001	2760	136	20	34	52	5	24	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0002	2760	78	18	12	39	1	8	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0003	2760	43	2	16	20	3	2	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0004	2760	41	15	3	17	0	6	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/1	c0005	2760	12	0	6	0	3	2	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0006	2760	7	7	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0007	2760	5	4	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0008	2760	4	3	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0009	2760	4	2	0	1	1	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0010	2760	4	4	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0011	2760	3	0	0	3	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0012	2760	2	2	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0013	2760	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0014	2760	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0015	2760	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0016	2760	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0017	2760	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0018	2760	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0019	2760	1	0	0	0	1	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0020	2760	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0021	2760	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344