JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MLXIP_chr12_122073756_122152344	0/0	c0022	2745	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0023	2760	1	0	1	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0024	2760	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0025	2760	1	0	0	1	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0026	2760	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLXIP_chr12_122073756_122152344	0/0	c0027	2760	1	1	0	0	0	0	copy fasta	MLXIP	chr12	122073756	122152344
MLX_chr17_42562100_42578203	1/1	c0001	735	230	81	47	73	6	21	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	c0002	735	137	9	13	90	4	21	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	c0003	735	25	0	14	0	6	5	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	c0004	735	5	0	0	5	0	0	copy fasta	MLX	chr17	42562100	42578203
MLX_chr17_42562100_42578203	0/0	c0005	735	1	0	0	0	0	1	copy fasta	MLX	chr17	42562100	42578203
MLYCD_chr16_83894115_83932031	1/1	c0001	1482	331	69	62	136	17	45	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0002	1482	39	1	10	26	1	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0003	1482	18	0	0	18	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0004	1482	9	6	2	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0005	1482	6	5	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0006	1482	6	6	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0007	1482	4	0	4	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0008	1482	3	0	0	3	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0009	1482	2	0	0	2	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0010	1482	2	1	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0011	1482	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0012	1482	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0013	1482	1	0	1	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0014	1482	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0015	1482	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0016	1482	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0017	1482	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0018	1482	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0019	1482	1	0	0	1	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0020	1482	1	1	0	0	0	0	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0021	1482	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MLYCD_chr16_83894115_83932031	0/0	c0022	1482	1	0	0	0	0	1	copy fasta	MLYCD	chr16	83894115	83932031
MMAA_chr4_145614385_145665033	1/1	c0001	1257	296	82	54	118	11	29	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	c0002	1257	35	5	7	16	0	7	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	c0003	1257	17	3	7	2	1	4	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	c0004	1257	2	2	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	c0005	1257	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAA_chr4_145614385_145665033	0/0	c0006	1257	1	1	0	0	0	0	copy fasta	MMAA	chr4	145614385	145665033
MMAB_chr12_109548715_109578504	1/0	c0001	753	171	24	26	88	6	26	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/1	c0002	753	86	34	21	21	3	6	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0003	753	86	16	14	39	7	10	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0004	753	16	16	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0005	753	2	2	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0006	753	2	0	0	2	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0007	753	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0008	753	1	0	1	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0009	753	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0010	753	1	1	0	0	0	0	copy fasta	MMAB	chr12	109548715	109578504
MMAB_chr12_109548715_109578504	0/0	c0011	753	1	0	0	1	0	0	copy fasta	MMAB	chr12	109548715	109578504