JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMACHC_chr1_45495300_45518382	1/1	c0001	849	198	38	42	85	9	22	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0002	849	149	18	26	79	7	19	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0003	849	16	15	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0004	849	8	7	1	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0005	849	7	7	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0006	849	2	0	0	2	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0007	849	1	0	0	0	0	1	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0008	849	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0009	849	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0010	849	1	1	0	0	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0011	849	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMACHC_chr1_45495300_45518382	0/0	c0012	849	1	0	0	1	0	0	copy fasta	MMACHC	chr1	45495300	45518382
MMADHC_chr2_149564637_149592775	0/0	c0001	891	233	40	61	85	13	34	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	1/1	c0002	891	90	44	9	26	1	8	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	c0003	891	5	5	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	c0004	891	2	0	2	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	c0005	891	1	0	0	1	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	c0006	891	1	1	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	c0007	891	1	1	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMADHC_chr2_149564637_149592775	0/0	c0008	891	1	1	0	0	0	0	copy fasta	MMADHC	chr2	149564637	149592775
MMD2_chr7_4900998_4964187	1/0	c0001	741	195	32	31	84	9	38	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/1	c0002	741	162	58	34	52	7	10	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	c0003	741	21	0	1	20	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	c0004	741	1	1	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	c0005	741	1	0	1	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	c0006	741	1	0	1	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD2_chr7_4900998_4964187	0/0	c0007	741	1	1	0	0	0	0	copy fasta	MMD2	chr7	4900998	4964187
MMD_chr17_55387622_55426835	1/1	c0001	717	393	81	69	178	16	47	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	c0002	717	11	10	1	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	c0003	717	3	3	0	0	0	0	copy fasta	MMD	chr17	55387622	55426835
MMD_chr17_55387622_55426835	0/0	c0004	717	1	0	0	0	0	1	copy fasta	MMD	chr17	55387622	55426835
MMEL1_chr1_2585639_2638016	0/1	c0001	2340	160	29	29	68	11	22	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0002	2340	137	33	29	58	2	15	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0003	2340	11	7	1	2	1	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0004	2340	5	5	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0005	2340	3	1	1	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0006	2340	3	0	2	0	0	1	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0007	2340	2	2	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0008	2340	2	2	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0009	2340	2	2	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0010	2340	2	1	0	0	1	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0011	2340	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0012	2340	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0013	2340	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0014	2340	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0015	2340	1	0	1	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0016	2340	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0017	2340	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0018	2340	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0019	2340	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016