JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMEL1_chr1_2585639_2638016	0/0	c0020	2340	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0021	2340	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0022	2340	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0023	2340	1	0	0	1	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0024	2340	1	0	1	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0025	2340	1	1	0	0	0	0	copy fasta	MMEL1	chr1	2585639	2638016
MMEL1_chr1_2585639_2638016	0/0	c0026	2340	1	0	0	0	1	0	copy fasta	MMEL1	chr1	2585639	2638016
MME_chr3_155075319_155188704	1/1	c0001	2253	325	92	48	133	16	34	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0002	2253	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0003	2253	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0004	2253	1	0	0	0	0	1	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0005	2253	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0006	2253	1	0	0	0	0	1	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0007	2253	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0008	2253	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0009	2253	1	1	0	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0010	2253	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0011	2253	1	0	1	0	0	0	copy fasta	MME	chr3	155075319	155188704
MME_chr3_155075319_155188704	0/0	c0012	2253	1	0	0	1	0	0	copy fasta	MME	chr3	155075319	155188704
MMGT1_chrX_135955588_135978988	1/1	c0001	396	264	52	45	126	13	26	copy fasta	MMGT1	chrX	135955588	135978988
MMGT1_chrX_135955588_135978988	0/0	c0002	399	1	0	0	1	0	0	copy fasta	MMGT1	chrX	135955588	135978988
MMP10_chr11_102765502_102785628	1/0	c0001	1431	303	39	51	176	7	29	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0002	1431	48	9	11	15	5	8	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0003	1431	32	21	8	0	0	3	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0004	1431	29	17	3	8	0	1	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0005	1431	24	1	5	13	1	4	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0006	1431	11	0	5	0	3	3	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0007	1431	2	2	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/1	c0008	1431	1	0	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0009	1431	1	1	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0010	1431	1	0	1	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0011	1431	1	1	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0012	1431	1	0	0	1	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0013	1431	1	1	0	0	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP10_chr11_102765502_102785628	0/0	c0014	1431	1	0	0	1	0	0	copy fasta	MMP10	chr11	102765502	102785628
MMP11_chr22_23767849_23789316	0/1	c0001	1467	267	37	66	118	13	32	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0002	1467	111	43	9	51	1	7	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0003	1467	14	2	0	7	0	5	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0004	1467	6	6	0	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0005	1467	4	3	1	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0006	1467	2	0	0	1	0	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0007	1467	2	2	0	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0008	1467	1	0	0	1	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0009	1467	1	0	0	0	0	1	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0010	1467	1	0	0	1	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0011	1467	1	1	0	0	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP11_chr22_23767849_23789316	0/0	c0012	1467	1	0	0	1	0	0	copy fasta	MMP11	chr22	23767849	23789316
MMP12_chr11_102857736_102879982	1/1	c0001	1413	388	75	75	185	13	38	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	c0002	1413	48	18	4	19	0	7	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	c0003	1413	3	3	0	0	0	0	copy fasta	MMP12	chr11	102857736	102879982