JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP12_chr11_102857736_102879982	0/0	c0004	1413	3	0	1	0	1	1	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	c0005	1413	2	2	0	0	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	c0006	1413	1	0	1	0	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	c0007	1413	1	0	1	0	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	c0008	1413	1	0	0	1	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP12_chr11_102857736_102879982	0/0	c0009	1413	1	0	0	1	0	0	copy fasta	MMP12	chr11	102857736	102879982
MMP13_chr11_102937995_102960732	1/1	c0001	1416	431	92	81	202	17	37	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0002	1416	4	4	0	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0003	1416	3	3	0	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0004	1416	2	0	0	2	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0005	1416	1	0	0	1	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0006	1416	1	0	0	0	1	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0007	1416	1	1	0	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0008	1416	1	0	1	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0009	1416	1	0	0	1	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0010	1416	1	0	0	0	0	1	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0011	1416	1	0	1	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0012	1416	1	0	0	1	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0013	1416	1	0	1	0	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP13_chr11_102937995_102960732	0/0	c0014	1416	1	0	0	1	0	0	copy fasta	MMP13	chr11	102937995	102960732
MMP14_chr14_22831585_22852758	0/1	c0001	1749	189	33	36	95	7	17	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0002	1749	129	16	18	81	4	10	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0003	1749	45	13	5	25	1	1	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0004	1749	38	1	17	4	2	14	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	1/0	c0005	1749	28	10	7	1	4	5	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0006	1749	5	5	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0007	1749	4	4	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0008	1749	4	4	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0009	1749	3	3	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0010	1749	2	2	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0011	1749	2	2	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0012	1749	2	0	0	1	0	1	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0013	1749	2	2	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0014	1749	2	2	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0015	1749	1	0	1	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0016	1749	1	0	0	0	0	1	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0017	1749	1	0	1	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0018	1749	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0019	1749	1	0	0	1	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0020	1764	1	0	0	1	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0021	1749	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0022	1749	1	0	1	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0023	1749	1	1	0	0	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0024	1749	1	0	0	0	0	1	copy fasta	MMP14	chr14	22831585	22852758
MMP14_chr14_22831585_22852758	0/0	c0025	1749	1	0	0	1	0	0	copy fasta	MMP14	chr14	22831585	22852758
MMP15_chr16_58020754_58051901	1/1	c0001	2010	202	44	40	86	8	22	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0002	2010	91	2	24	50	4	11	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0003	2010	38	36	2	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0004	2010	12	0	0	12	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0005	2010	6	1	0	4	0	1	copy fasta	MMP15	chr16	58020754	58051901