JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MMP15_chr16_58020754_58051901	0/0	c0006	2010	3	3	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0007	2010	2	2	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0008	2010	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0009	2010	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0010	2010	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0011	2010	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0012	2010	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0013	2010	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0014	2010	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0015	2010	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0016	2010	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0017	2010	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0018	2010	1	0	1	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0019	2010	1	1	0	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0020	2010	1	0	1	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0021	2010	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0022	2010	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0023	2010	1	0	1	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0024	2010	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0025	2010	1	0	0	1	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0026	2010	1	0	0	0	0	1	copy fasta	MMP15	chr16	58020754	58051901
MMP15_chr16_58020754_58051901	0/0	c0027	2010	1	0	1	0	0	0	copy fasta	MMP15	chr16	58020754	58051901
MMP16_chr8_88027011_88332483	1/1	c0001	1824	177	70	24	47	8	26	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	c0002	1824	3	2	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	c0003	1824	1	0	0	0	0	1	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	c0004	1824	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	c0005	1824	1	0	1	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	c0006	1824	1	0	0	1	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	c0007	1824	1	0	0	0	0	1	copy fasta	MMP16	chr8	88027011	88332483
MMP16_chr8_88027011_88332483	0/0	c0008	1824	1	1	0	0	0	0	copy fasta	MMP16	chr8	88027011	88332483
MMP17_chr12_131823393_131856771	0/1	c0001	1821	93	16	23	33	8	12	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0002	1821	80	10	13	45	2	10	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0003	1821	38	0	0	33	0	5	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0004	1821	33	9	15	0	3	6	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0005	1821	32	4	0	28	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0006	1821	26	13	10	0	2	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0007	1821	17	13	4	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0008	1821	16	0	2	4	1	9	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0009	1821	7	3	0	4	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0010	1812	5	5	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0011	1821	5	2	3	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0012	1812	4	2	2	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0013	1821	4	0	2	1	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0014	1821	3	1	0	1	0	1	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0015	1812	2	2	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0016	1821	2	2	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0017	1821	2	2	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0018	1821	2	0	0	2	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0019	1821	2	2	0	0	0	0	copy fasta	MMP17	chr12	131823393	131856771
MMP17_chr12_131823393_131856771	0/0	c0020	1821	2	0	0	2	0	0	copy fasta	MMP17	chr12	131823393	131856771